RNA id: XM_026913714.2


Basic Information

Item Value
RNA id XM_026913714.2
length 4270
RNA type mRNA
GC content 0.49
exon number 16
gene id dhx34
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19309888 ~ 19333430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAAATGGCTGCTTGTGTGAATGTTTTCGTTATGACGCGGACATCACGTGACAGTGCAGCTCCAAGTGGAAATGAACGCTGCAGGGGCAGGAGCAGCGCTGATGCCACTGTGTAGCTGTGGCTCAGTCCAGTGCAACCCGTCGAGCACGCGTGGTTTACTCGCTTTTTTGTAGACGGGGGGAAGTGAGTTACAGGCAGATTTTAAAACTCATCGGGCCCCCAGCGGATTATTTACACCGCCGAAATGCACACTATGCTCTTTGTAATCAAGTTCCAAATCGTGTGGCCGTGTGAGGAAACGAAGCGTCTGACGTCACTGGTCACGTGTTTGTGGCGGAACGAATCAAATACGATATAGAGGTTAGCAGTAAAGTGCCTGTTTGACAGTCATGTGTTGTGGAATTTGTTAGGTGACAGATGTTTGCATAGATACAACCTAAGTTACAGTAATCTGCAACTTCTAAAAAGATTCAAAGTTATACCAACGTGGATGTCCGTCAGTctggttgtttctttattaCGGAAATATAAGCATACGCCGGTTTGACAGTTATTCATTATTTACGGTGCTGTGAGATTCACGTTAGCATTCCAGCGGATAGAGATGTCTGAGAGCGGAGGCAGCTGTCGGGGCTGGGACTGGAGTAGTCCAGAGTGTCGTGCCCGGATGGATGAGATCTTTTTTCGCCAGCACGACTACATTCAGGCGAAAAGTATTGAACACAAGGAGTTTTGGGCTTTCTTTGAGCGCTTTCAGCGGTTTAAAGCCAAAAAGGAGATGGCGGGCTCAAAACCCAGCAAAAGTATGGCAGAGTTACGGAAGAAACGTGCAAGTGGCACAGTGGATCTTGGGCTCCCAAAGGAATATGATGCACGATACAGGATCAACATCTTTGTAAACACCAGAGACGTGGAGGATCGTCTCGGAGGCTTCCATGGCAGGCGACCCAGGGACAAGCCGAACGACCCAAGCAGCCAGGAGGTCACAGACTGTCGCCTTGCCCTGCTTCATTTTCTAGACTTCACTCAGAAGCAGAGCTTCTGTAAACTCCTCAAGCTGCAGCGTGAGCAGAAGAGCCTGCCCATCTATCATTACCGTGACCGGATTGTGGAGCTGGTCCAAACCCATCcggtggtggtggtggctgGAGACACTGGCTGTGGGAAGTCCACACAGGTGCCCCAGTACCTGTTGGCGTCTGGCTTTAACCATATAGCCTGTACTCAGCCTCGCCGCATTGCCTGCATTTCCCTAGCTAAGAGAGTGAGCGTTGAGAGCCTCAACCAGTATGGTTCCAAGGTTGGCTACCAGATCCGCTTTGAGAGCAGGCGCACATCAGGCACTAAACTCCTGTTCCTGACTGAGGGTCTGCTCCTCAAGCAGATACAACATGACGCTATGTTGTCCCAGTACCATGTGGTGATTGTAGATGAGGTTCATGAAAGACACCTGCACTGTGACTTCCTGTTGGGTGTGCTGCACTCCTTGCTTCGCAAGCGGCCAGACCTGCGCTTAGTTCTTATGTCTGCCACCATCAACATCAAACTCTTCTCCAGCTACTTCAGCAATGCACCTGTGCTGCAAGTGCCAGGTAGACTCTTCCCCATTCAGGTGATATACCAGCCCATCTCTCAAAAGGAACAAGTGTCCCAAATGGAGAAGCTGGATCCAAGACCATACCTGCGTGTGCTGCAGGGCATTGACCAGCGCTATCCCCCTGAGGAGCGGGGCGATCTGCTGATTTTCCTTAGTGGTTTAGCTGAAATCTCCACTATCATGGAGGCATGCCAAACCTACGCTGCACACACGAGTCGCTGGATCGTACTGCCGCTGCACAGTACCTTGTCACTGGCACAGCAGAATAAGGTCTTTGACGTTGCTCCCCCAGGGTTGAGAAAATGCATCATTTCCACCAACATAGCTGAAACCTCAGTGACCATTGATGGGGTGCGCTTTGTAGTCGACTCAGGTAAAGTAAAGGAAATGACCTTCGACCCAAAGGCCAAGATGCAGAGACTTCAGGAGTTCTGGATTAGTCGTGCCAGTTCTGAGCAGAGGAAAGGTCGTGCAGGTCGAACAGGGCCAGGAGTTTGCTACCGGCTCTATGCTGAGTCAGACTATGAGGCCTTTGCCCCTTACCCTGTTCCCGAGATCCATCGAGTGGCTCTAGACTTGTTAGTGCTACAGATGAAGAGTATGGGTCTGGGAGATCCTTGTTCTTTTAACTTCATAGACCCTCCTGCAGCCTTTAGCATTCAGACATCTGTGAGGTATCTAAAAGAACAAGGGGCACTAGACGCTCAGGGAGAGCTCACCCCCATGGGCAATCTGCTGGCCAAGCTCCCTGTGGATGTGGTTATTGgTAAAATGCTAGTTTTAGGTTCATTATTCAACCTGGTGGAGCCAGTGTTGACTGTAGCTGCAGCACTGAGTGTTCAGTCACCATTTCTGCGCAGTACTCAGCACAACCCAGATTGTGCCACTGCACGCCAACCCTTGGAAAGTGACCTGGGAGACCCCTTCACCCTGCTCAATACCTTTAATGCATGGGTACAGGTGAAAGGGGATAGGGGAGGAGGCTCCAGGAAGTGGTGCAAAAGAAGAGGACTAGAGGAGCAGAGACTGTATGAGATGGCCAACCTGAGACGACAGTTCAAGGAGCTGTTGAGGAGTCATGGCCTGGTGGAGCCTGAGGCGGGCTACATAGCTGAGGACCAGGCCCAGCGGAGGAAGAGGCTGACTGAACGTCAGAGACTGCACCAGCTGAAGAGGGAGCATGAGTTAATGGAGAACAGCCACAGGAAAGTGTTGCGTCTGGAGGAAGGCCTGGAGCAAGGGTTGTCGTCTGACTCAGATGAGGAGGCAGCAGGGTCAAGCAAGATGGACAAAGACTCTGTAGCACAGGATGTGGACATACAGGAAGTGAAGTTCAAACTGCGGCATGATGTTAGCAAGCTTCAGGGAGATGCATACGCCAGTGCAGCGCTGTCGTCTCGGCAACAGGCTCTTTTCAGACTGGTGCTGTGCCGTGGCCTATACCCACAGCTGGCCCTGCCTGATGAACATAACTCTGCCCGCAAAGATTCCgagcaggTGTTTCACACTCGTAACAAGCAAGGTGTTGTGATTCACCCCACCAGTGTTTTTGCCAGTAATTCGGATTTGCTGCACATCACTCAGTATGAGTCCAGTGCTGAAAAGGGGCAGAGTAATGGGCATCAGTTGCTGGCTTTTGTAACTCTGCTTGAAACTAACAAGCCTTATGTGTCAAACTGTGTACGGGTCCCTGCCCTACAGGTTTTGCTGCTGGTGGCAAACTCTATAGACAGCAATGCAGACTGCACACGGCTGGTGGTGGATGGCTGGCTGGAGCTGGTTATAAGTGATAGTGTGGCAGCTCTCAAAGTGCTGTCCTCTGCCCTCATGATGAGAGACAGTTGGGACAGTCTGCTACAGGCCAAGTTGAGCCAGTCGGGTTTGAGATCTAATGCGGTTCTGGGTTTTGCTGGCCCAATACCAACCCATCATGGGTTAGAGAAAGTCACAGCTGAACTCGTACGCTTTCTACTGTATACTGAGGTGAGTTACAGTCTGAGAAGGCTTACCCCACTGCAGTCTCAGAACCTGTACATTGGACCTCAGCTGAACATGGAGGTTTCCCTCCCCCCTCTCTTCcctgaaatgaaaactgaaccTGATTCAATTAAAGGAGGTCTACATGTCACCAGCTACTTCACCTATAATTGCCTCTGTGACTCCAAAGACTTGTACAGTGAGTGTTTACGGACATTTTGGACATGCCCTCACTGTGACCTGCACATGCCCTTCACACCACTGGAGCAAATGCAGCATGAGGCCACCTGTAGACCACTAGAGGAACAGCAGACTAAGGAGGAGCCTGACACAGTAAAATCTGGATTCTCGTCTAATCTGACTAGACTCTACCACTGTAATATCTGTAAGAAAGACTTAACCCTAACCTCCACCGAGATACTTAAACACAAGCGTCAACACCAGTCCTGAGTTCTTCCTGCCACTGTGCACAGAACTAACTCAGTACCAGatggagttatactgtatatttttttctttttgaagaaGAAATTTGTGAAAGATTCTTGTAAAAATAGgtatgtgtgtttctgaaaCATATAGATATGTGTATGTAAAAATAGGTATGTGTATTAggtatgtgtatttgtgaagCATAATCCtctccatttcatttttatactataaataaaatggtctggtAATTTCTTGATCAA

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20101 DHX34; ATP-dependent RNA helicase DHX34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120553 lncRNA downstream 10526 19298891 ~ 19299362 (-) True G101846
TU120514 lncRNA downstream 56525 19252853 ~ 19253363 (-) True G101809
TU120510 lncRNA downstream 68739 19240171 ~ 19241149 (-) True G101805
TU120451 lncRNA downstream 182529 19126638 ~ 19127359 (-) True G101750
TU120450 lncRNA downstream 184448 19123917 ~ 19125440 (-) True G101749
TU120579 lncRNA upstream 27362 19360792 ~ 19361008 (-) True G101865
TU120585 lncRNA upstream 29142 19362572 ~ 19363809 (-) True LOC113526920
XR_003402820.2 lncRNA upstream 29258 19362688 ~ 19363800 (-) False LOC113526920
TU120659 lncRNA upstream 61641 19395071 ~ 19395304 (-) True G101932
TU120665 lncRNA upstream 157099 19490529 ~ 19491255 (-) True G101938
XM_034305474.1 mRNA downstream 568164 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA downstream 568164 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA downstream 568164 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA downstream 568164 18734427 ~ 18741724 (-) True znf710a
XM_026932720.2 mRNA downstream 785662 18282619 ~ 18524226 (-) False rasgrf1
XM_026913684.2 mRNA upstream 73620 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA upstream 73620 19407050 ~ 19496990 (-) False pik3c2a
XM_026913612.2 mRNA upstream 717902 20051332 ~ 20054436 (-) True LOC113526513
XM_026913745.2 mRNA upstream 881712 20215142 ~ 20292323 (-) True nectin1b
XM_026913303.2 mRNA upstream 1028900 20362330 ~ 20377332 (-) True si:ch211-132b12.7
TU119855 other downstream 1113082 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 1222917 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3955251 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4962880 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 5521041 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 17332 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 646639 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 1620172 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 1661911 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 2901273 22234703 ~ 22306769 (-) False si

Expression Profile