RNA id: XM_034305181.1


Basic Information

Item Value
RNA id XM_034305181.1
length 7030
RNA type mRNA
GC content 0.43
exon number 15
gene id alpk3a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17422361 ~ 17478285 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCTGTGTATGACACTGATTATAACTCTTCCTTGGAGTGTCCTAGCAAGTGGCTTTGGAACGGTGCCTAGATTCGGAAAATGTGATGTGCTCTTGCTCCTATTTGTAGGCCTGCTATAAATAGGGCCCTTCTGGCACCACATGCTCAGCCATGATTGACAAATGCAGAGCATTGGTCCAGTGAAAGCAGCCTCTAAACAActagaaaaaacacacaaatgCTCCAGACTCAGTAGAGTGGAGTATTTTTACTAGGAGTTTGGGTAGCAGAGACTGTTTTATTCCAAAGCACCAGAGTTATTCTACAGCAAGCCACCATTTTCATTTGGATTATATAAACCAGAGTATTTTCTGGACAATGACATCACGGAGGCCAATGACCCATTCATATTCAGGCAATGGGAGATATGGCAGTCAAAACGGGGACGATGTCCTGTCACCACGTTTAGATAGCCGCAACTACCTCTCCAGTGTCCGGCCTGAAAACAGGAGTACATTTTGTACTGTCATGTCTCAGCTGACAGAAGAGACTCAGCCATGTTTTGAGACTACCATCAAGTCCAAGGCAGTATCAGAGGCCTGCAATGTGAAATTCACCTGTGTGGTCACAGGCTACCCAGTTCCTGAGCTGACTTGGTATAAAGATGACATGGAATTAGACAGATATTGTGGTCTTCCCAAGTATGAAATTTTTCGCAATGGAAAAATCCATACGCTCCATATCTACAACTGCACAGTGGATGATGCAGCCATCTATCAGGCATCAGCCAGGAACAGCAAGGGTATTGTCTCTTGTTCTGGGGTATTAGAGGTGGGCACCATGAGTGAATACAAAATCCACCAGAGGTTCTTTGCCAAGCTCAAGCAGAAGGCTGAACTAAAACGAAGAGAGTTAGAACACAGTTACTGCCAAGAGAAGGAGAACATTCTACAGGAACATCTGAGCAGCAGCCAGAACACTGTTAGGCGGACTGATGGTCTAGTGCACAACTcatcatctgtccagtttggagAGTACAATGATGCAAAAGAGGGGGAAATAACTGAGGACCAGCCAGAAGCTCTTAATGAGGAGATGAATAGGCTTTCAGTAAAAGTCCACAGATCTGATAGAAGTCAAGAAAATGACAGTCAGCATATGAGCTCAAATGTAGGTCAAAATAATGGTAATCAACAGCTTATCTACGGTTCGGAGAAGGGAGAAATTGGTGACACCACCCCATCCACCAAAGAGAAAGTAACCAGAACTAATATCTCGATCTCCAATGGATTTGATGAGACTTTTACCACTCAGTCTAACCAAGGTACAGGAGAAGGGAAGGATACACATGAGGGAATGAGCCTGGCAAAGATCTTGGTAGAGTCCTTGCAATTAAAATTTGGTGAAGAACATCAAAAgactacacttcagtcacatgaGATTACAAGCACTAAAGCCAGCACCATtcaagaaagggaaagagagaaggaggtgGACACAGAGGAGGAAAAGATGAAAGCTGAAGGAAGGCATCAGGAGTGGGAGAGTTGCTGGGAAGGAGAACACGAAAGGTCATtggaaaaagaacaagaaaatatTAGACAGCTTGAGCATGAACACAGAACTGCAACTGCTTCTGAAGCAAAGACGCCGGTATACAAAGAACCAGAGTACCAGCAAAAGTCTGCACTCAGCTCAATGTTTCATTCCCTAAAGGACATATTCTTTGGCAAGAGTAAAAAATCACCTGAGATCACAGACTCCTCTAAGAAAGTCAGTGACATAAATGTCAAAAAAGAAATCCTGGCTGTTAATACAGAAGCACATAGTCATCTCCCACAAACGCAGCCACAAAGATATGACACAACATCAGATGTCTGTGGTACCATGCCAGATCAGCTTGTGCCTGTGGCAATAGATCAGCAAAATCAAACTGGAACCCTTTATGTAAATACACACTTTTTCCAGGAAACACCCTCATTACATATTAAGACTGAGATGGAGAGTTTGAATTTGGATAATCACATTCATGGGTTTACTACAAATTACATCAAAGATATCTCCCAAGCGTCTAAGATACTTTATGAGAgtgtagaagaagaaaaggaagctGGTCCAGAAGCACTTCAAAAGAACACCTTGTTGACAATTCATGAGGCTTCAGATGACCACACAGAGCCCAACAATGATGACCACATGGTTCAGGTGAGTCATGAGAATGCTGGGCAGGAATGCACTGCTGTCACTGATCAAAGGATTCAAGATGGTGGGGAAATTAAAGCTGTGAAGGAACAAGATGATACTGCAGACTTCAGAGTGATGTCAAAAGCCTCAATGCCACAGCCAAACAGGACAGACTTGGAAAGCTGCAAGAGCTCTCCTGAGGCTCAAATTTCAATGCCAGTCAGCCCAGCAACTCTCCTGGTGCCCAAAAAGTGTGTGCACAATGATGGTATTAGGGTGGATGAGAGAATAGCAGAAAGTAACCTCAATAAAGAAAGTGAAGACAAGATGGATGTGGCAATAGCAGAATCAACAGATTTCACAAAGTTGTCTGGGACAGACACTGTTGATATTACAGAAAGATTAATTCTTCACACATATGAGAAGGGACAACAATGCAATGCCATTTCTCAAGAAAAATCAACCCCAGTACTTGACATGTGTCATGGGGAATCTTATATAATGGAGAGTAACATTATACAAAATTCTGTTCTGGTTCTTAACAGTTTTATGGAAGATGTGCAAGGGTTTGCAGCAGGGTCTGTTATACATGATACTAGTAAGGTGGAAACTGTAAGTAGCGCTGGAAATAAGGATAATAACATTGAAACAAAGAAGGTTGATAGGATTGAAAAAATGAAGGAGAAGCAAGATGAAAGTACAGAGAAAAAGATGGGTAATGAAAGTGAGCAGATAGGTGATAGCAAAGGAGAAAGCACAAATTTTATCTCTGAGCAAGGTACAGGaatttctaaatataaaaagcAACCAGAACTAGAGGGACTAGAGGCTCATTTAAGTTTAAAGGTAGGAGAAACAACAAAGATATATACAAAACTACAACCAGAAAGGCACACAGTTGAGTCTAGAGACCAATCAGTTGTCTCTCCAATCATAATTCTTCCTGACACACGGGAAACAGTTATCAAAAATGTAGCAAAGATGAGAGCTATGCCATTTACCCCAGAAATCAAGGTTACAGTCCCAGAAAAAGTCAAACATGAGGAGCCTTTCACTGTCCCTAGAATAGATGTTCTGTTATCAGAACCTGAGAGAGTTATCCATCCACTGGTTCACGATGTTGCACTTATGCATAGAGATAATGAACCTTCTTCTGAGGAGCCAATGGGCGTTGCCTCAAGAACTCCAAAGCAAAATACCAGAGATGACAGAGTGGTGATAATTGCAGAGCCTGTAGATGTTACACCTCCTCAGCATAAAAAGAATGTTGAATGGGTTCCATTAGACCAGAGAACCGAAGAAGTTAAAACAGAAAATTTAGAGGTTCAAATGGGTGATAGAGAAGAACCATCCAGAGTCAGTAGTGGTTGGAGTAGAGGAAATGACAGCAATAGTATTCCTATAATCAGCATAGTAGCATGTGCCGATGAGATGACACCCTTCCAAGAGCAGGAGAAAGAATATGGAAAACCTGTCTTTCATAATACAGTTCAACCAGACAGTGCAGATCTTAAAATGAAAGCCtattcatcttcatttttcACCACAACACATGTAGAAAGCAGTATAGAAAACAGtataaaaaaggaaacagtACCAGAGTCTTTGACTGTCATACTTGGGGAGGTGGGGGGTCAGTTTGACAGTGGAGCCAGTCCCACAAATCAAGTAGTTGAGAAGGCTACATTGCAAAAAGAAGGAACTGAGAGAAGGAACTTGGTGGAGACTCAACTGAGCTCTGATGTCTCCTCAGCATTATCACcaaaagcatttcaaaataCCACTGTCTGTGACACTGAGGTCTGTCCAGACAAAGAATCAAAAGTGGAACCTGATGCTGACAGGTTCCAAAGGGAAAAACCTGCTATGGAAAAACTTGGCCTAACAACCCCTGTTGGACCAACACTTCCCCCGCTCAGCCCAGCCAGTTTGCGTAGGCTTATGGCAAAGAATAACCCTAACTTGGAAAGCCAAGGTTCTACTGTCACCATATTAGGGGATGGAAGtgagaagaaaggagaagatAGTGGAGGCAGCACACCCACATCCACTCTATCTTGTGAGAGCAGCCCCAAGATGAAACGGCGAGACAGCCTGACTCTTATCCCTTCTGCTACCCCAGAGGAGCTGGCATCTGGGGCTCGCAGAAAAATCTACCTTGCCAAAACAAAGTCTGAAGACGAAAGCTCAGACACACAATGCAAGAGAGACAGCCCATACATGTCACCAAGTCAGGCACGCAGGGCTGCTTTTTTGCAACTTCAGAGTGGGCAACAAGCACAGCACATGGAAAAACGTTCACCTTTGTTAAGTCGCCGTAAAACCATGGTGGAGGTGCACAAATCTAAGGAGGAGCCTTCAGAGGAGACTAACATGTCAAACATAGAGCGCAAAccagcagaaaaagaaaagccagACCCCTACAAAGCTCCTCAGGTAATCCGCAAGATCAGGGGAGAACCCTTCTCAGATGCCTTGGGCCACTTGAAGCTGTGGTGTCAATTCTTTAATGTGCTCAGTGACTCCACAATCAAGTGGCTCAAAGATGATGTACAAAttgcagaaataaaaagaagTGCAGGAGATGAGAGTCAAGTGGCACTGGCCATTGTTCAGGCATCCAACAGAGACTGTGGAGTATATGGCTGCACTATCAAGAATGAATATGGCACTGACACAACTGACTACTTACTCAGCTCAGACATACTGGCTGAGTTCTTCTTACGTGATGATTCAGAAGTGGGAGAGGAGATTGAGATGACACCCTTGCTGTTCACCAAAGGCCTGGTGGACCCTGGCTACTGGGGTAATAAGTTCTTTGGTCGCATTATGACAGAGGAGCTACAAATTGGGGAAGGATGTGCACACAAATACAGCAGAGCCAAGGTCATCTATGGTCTGGATCCTATCTTTGAGTCAGGAAGCACCTGCATTGTCAAAGTGAGAAACCACATTGTGTTTGGGACCAAAGAAGAAAACTGCTTGGCTGAGATAAATTTAGAGATCACCAAACAGGAATGTAAAATCCATAACACAGTCCGGGAATACTGCAAAATCTTTGCTGCTGAGGCAAGAGTGATCGAAAAATTTGGTTTTGCATTAGAAGTGATTCCATTATATTTGATCTACCGGCCTGCCAACACCATCCCATATGCAACAATGGAGGCTGATTTAAAGAGGGAATATTTGAAATACTGCACACTGGACAACACCGGAAGACTGATCACTCGAACCACATCTGAAGTGGAGCAAAAATGTTGTACATTTCAGCACTGGATCTACCAGTGGACAAATGGAAATCTGCTGGTCACACAGCTAGAAGGTGTAGATACAAAGATCACAAATGTTAAGATTGCCACCAAGTCCAAGGGCTATCAGAGTCTCACAGATGAAGGCTCCCCGAAGATATTGGAACAATTtgtcatccaacatcagtgcaaCTACTACTGTGGGTTGCTTGGCCTGAGGACCCTGATGACTATTGATTCTTCGCAGCAATCAAAGATAAAGACATCCAGGAGTCCTATGCTAGCTCGTAGGGTGGGTCTCGCTGATTCATCCAGCCCACAGCTTCTGAAGAAAGGCTCAAGCAGCCCTCAAACAGCCAAGAATGTAAACTCTAGTCCCAAGGTAGCCAGAAAGACTGATGAAGATGGGGAGAACAACAGTGCTACCAAACATAAAACCATGGAGGTCCCCAAATCTGTCAGAATGAGAGCCACTGCACCGCTCTGTTCATACACAGTGGGAGGACCCAACACGAACTGATCATGACTACACAAAGATGGGCAAAGAAAAAGATGTGAAGGACCAGATGACACAGTGTAGTGAGTTTGGCTCCTTCGTGCTGCAAAGTGATGAGGATTCTTTGCTCTACACTGGTCTTCcaaatgaaacatttaacaCCCTAGTTTCAACACGCTCCAGCTTTGCTTGCAGTGCTTTCACAATGCCAGTACAAGACCAAATACTGATGGCATTAATAAAATTGAGATTAAACCATGTGACAGCTGATCTATGTAGATAGTTCTGTGTATCAGTAAGCATGTCTAGTAAGATCATCTCTCCTATTGGATTGACAAGATGGAGGAAGTCCTAAGACCACTTATTCCTTGGGTTCCAAAAGAAACTATTTTTGCAACCATGCCAgcattgtttaaacattttttttttcaaatacatGCATTACAGACTGCAGTGAGAGCCTGTTGCCAAAACCCAGAAACTTGGATTCTAGAGGAGAGACATTCAGCCACTACTactaacacaacacaaacaagtATCTTGTTTCTGTTGCCCCATGCAGATTAATCATGTTCATCTCAGCAGCATATGGTGGGCACTGCAGTGTTAAATTCATTACCATGAATTCAGGAATACTGTAGTACTTAATGCCTGGAGATGAGGTTATGGCAGACAGAGGTTTTACAGTTAGAGATGTATTGTTTGAAAGAAAAGTCAAGTTAGTAGTTCCTTCTTTTCCAAGAAAGGTTTGCAAATATCAGAGGAAGAAGTAACCGCCACTGGAAGAATTATGACACTTCGAATTCATGTAGAAAGACCCATCAGATGTCTAAAAGTGTACAACATATTGTGTCCCAGGTTGTGCCAATTAACATGGCTCCAAAAATAGCATTTGCAAATTTGTGAAATGGCCTCATTCATGATTCTGATCAATTTGATTAGCAAACAATGCACACCTACAAAAGCAACAGGCTTAAAGCTGATTCAGTGAGATTCAGTTGTAAAGCGAAGAGGAACTGAAACTGATATATCAATAGATTTAATGAATAAAcgcaatattttttattttgcaatattGAACAGTATGAGTTTGAACTGTATTTtagattaatgtaaatata

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119386 lncRNA downstream 14975 17407090 ~ 17407386 (-) True G100727
XR_003403938.2 lncRNA downstream 67600 17345629 ~ 17354761 (-) True LOC113539580
TU119311 lncRNA downstream 157952 17249178 ~ 17264409 (-) True G100663
TU119295 lncRNA downstream 232928 17188158 ~ 17189433 (-) True G100648
TU119276 lncRNA downstream 271183 17150897 ~ 17151178 (-) True G100629
TU119402 lncRNA upstream 15129 17493412 ~ 17493623 (-) True G100739
TU119413 lncRNA upstream 64858 17543141 ~ 17543353 (-) True G100748
TU119429 lncRNA upstream 120206 17598489 ~ 17602770 (-) True G100764
TU119430 lncRNA upstream 124946 17603229 ~ 17603658 (-) True G100765
TU119436 lncRNA upstream 239068 17717351 ~ 17718028 (-) True G100771
XM_026935694.2 mRNA downstream 114459 17088641 ~ 17307902 (-) False LOC113539712
XM_026935693.2 mRNA downstream 114459 17088641 ~ 17307902 (-) True LOC113539712
XM_026935696.2 mRNA downstream 175894 17088641 ~ 17246467 (-) False LOC113539712
XM_026935698.2 mRNA downstream 188658 17088641 ~ 17233703 (-) False LOC113539712
XM_026935695.2 mRNA downstream 193417 17088641 ~ 17228944 (-) False LOC113539712
XM_034305437.1 mRNA upstream 242262 17720545 ~ 17725320 (-) True LOC117597582
XM_034305438.1 mRNA upstream 242262 17720545 ~ 17725315 (-) False LOC117597582
XM_026932720.2 mRNA upstream 804336 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA upstream 804336 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA upstream 804336 18282619 ~ 18509549 (-) False rasgrf1
TU118530 other downstream 2067724 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 3075353 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3633514 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3634162 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3634575 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 608372 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 709164 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 1872479 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 2501786 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 3475319 20953602 ~ 20966910 (-) True G102566

Expression Profile