RNA id: XM_026927150.2


Basic Information

Item Value
RNA id XM_026927150.2
length 5882
RNA type mRNA
GC content 0.50
exon number 8
gene id znf423
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12988345 ~ 13137217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctcccgctctgtgtgtgtgtgcgtgtgtgtgtgtgcgtgctgctGAAGCCCAGGCTGCGCGGAGCTCCCTGCGGGATCGGAGCGCTCCCCCGCCGGGACCCTACTCTCACATCCTCCCTGCTGGGACACGGGGCTACATTTCCAGCCAAGCCTGCGCTTTATTATGTGTGTCTGCGCCGCAGCCCCGCCAGCATTCGGATCGGGAGGCGGAGGGAAGACCAGAGTCAGGACAAAGAAGAAAAGGGAGAGAGCGAGGCTATAGCGCTTAACGTTTACAGCTCTTTTTGGGgggcatttatatatatatattttttgagcGAATTAACCCctacaggtgagagagagatatatataaaaaagatgCCTAAAACGGCGCCCTAAAAAATAAAGAGGGCGGTTCAGTTGAGTGTTTGGCTGGATCAGAGGACAAGAAAGACGGACAAAACTGGACAAAACGGAACCTCAAGCGGACCACGCGGAATAGGAGCAACAACACAACTGCACTGGACATTTAAGCGGCGTTAACGCAGTAACAGGACGCACCGGCACCTTGCTCGCCACCATCCGATTCTCATAACgctttgcttttttcttcttcttcttcttttgaaAACTCCTCTCACTCGCCTTTGCGCGCGGACTGGAAAAAGCCGCAGCGCGAGGATCCGCTCCTGCAATCTACAGGTTGAAACCGTGCGCGCGAAGTTGCCAAAGCGCCGGAATATCCGCTCGCCATTACTCTCTCCTCTTTCCCTCggagtgctgctgctgctgctggtctGGCacgacactcacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacaagagcgAAGTAGCCGCATTGCAACAGGCAACagggacaaaaaaaagtgccaGCCTGTAGCCTATGACTGTTTGCAAGAAAGGACAAGAGGTCGATAGAAGCAGAAGCACACCGACTCAGAGATGTCCAGGCGCAAGCAGGCCAAACCGCGCTCCGTTAAAGCAGTGGAGGAGGCAGACTCGGCCGAATGTGCAGGAAGTTGGGATTCCTCGGCTCCAGCAGgTGCAGATGCAGCCGTGCCTGAACGAGACTCTGACGGGAAAGAGCGGGCCGGTGGTGAAGACGGCGAGCACAGCGTGACCAGCCACGACGAGCGAGCAGGAGAGGAGGATCTGGACGACGAGTCCATCTTCACCTGTGATAACTGCCAACAGGACTTTGAGTGCCTGGCTGACCTGACGGAGCACCGCACTAACCACTGtcctgcagATGGTGACGATGACCCAGGGCTCTCCTGGGTGGCGTCCTCTCCCTCCAGCAAAGACGTGGCATCGCCATCACAGATGCTAGGGGATGGCTGCTGCGATCTGGGCATGGGGGAGGAAGAAGGAGGCTCCGGCCTTCCTTATCCCTGCCAGTTCTGCGATAAGTCCTTCAGCCGTCTCAGCTACCTGAAGCGCCACGAACAGATTCACAGCGACAAGCTGCCCTTTAAGTGCACCTTCTGCAGTCGGCTGTTCAAACACAAGCGCAGCCGTGACCGTCATGTCAAGCTGCACACCGGTGACAAGAAGTACAGCTGCCAGGAGTGTGAGGCTGCCTTCTCACGTAGTGATCACCTTAAGATCCACCTGAAGACACATAGTTCCAGCAAGCCCTTTAAGTGCAGCATTTGCAAGCGTGGCTTCTCCTCCACATCTTCACTACAGAGCCACATGCAGGCTCATAGGAAAAACAAGGAACACATGGCAAAAAAAGACCAGGTCAAGCGTGATGGATCCACGGGTGATGCAGCTGACCAAGACCAGGACCTATACATGTGTGATTACTGTGAGGAGACTTTCAGCCAAACAGATGAGTTAGAGAAGCATGTACTAACACGCCACCCTCAGCTTTCAGACCGTGCTGAACTGCAGTGCATCCATTGTCCAGAGATTTTTTGTGATGAAGGCACCTTGCTCACACACATTGATCGAATACATGCCAACAAGAAACATAAGTGCCCCATGTGTGCAGAGCAATTTACATCTGTAGAAGATGTCTACTGCCACCTGGACAGCCACCGGCAACCTGACTCCAGCAACCACAGTGCCAGTCCTGATCCGGTTCTGGGCAGTGTAGCATCCATGAGCAGTGCCACTCCTGACTCCAGTGCCTCGCTTGAAAGAGGATCCACTCCAGATTCAACCCTCAAGCCTGCACAGGGCAGACGCAAATTAGTCCCATCCTCTGACCATGATGAGGGAGGCTGGTCAGGAAAGGTGACATATAGTTGCCCTTATTGCTCCAAGAGAGATTTCAACAGCCTTGCTGTTCTGGAGATTCACCTGAAGACTATTCATGCAGACAAACCTCAGCAAAGCCACACCTGTCAACTGTGTCTCGACACCCTGCCAACTCTGTACAATCTGAACGAGCATGTACGGAAAGCACATCGATCCAGTGGGGGCTCTGCATCCAACTTTCCCCTTCTGCAATTTAGTAATGTTTCTGCCTTTCACTGCAACTACTGCCCAGACATGTTTGCTGATATCAATAGCCTGCAAGAGCACATCCGTGTTTCTCACTGCTTGCCTAGTGGTGTGGTTGCTGGCTCTACCACTCTAGAGGGCAACCATGCCTTCTTCTGTAATCAGTGCTCCATGGGGTTCCTTACAGAATCATCCCTCACTGAACACATCCAGCAGACCCACTGCAACAATGCAGGTGGTGTGACCAAGATGGAGTCTCCTGTACTGCAGCCTTCACAGTCTTTCATGGAAGTGTATTCTTGCCCCTATTGTACCAATTCTCCCATCTTTGGATCCCTACTTAAGCTCACTAAACACATCAAGGAGAACCACAAGAACATCCCACTGGCCAACAACAAGCGCAAAGTCAAAGTGGCAGACCTGAGTCCTGCTTCTTCTGATGTGGAAATCTCCTCCCCGAAACGCCACAGAGTGGCTGGTGATTCTGCTCCTGCAGGTGCTAATGGGGACTATCCCTGCAACCAGTGTGACCTTCGCTTTACTAGCTTTGAAAGCTTCCAGGCCCACCTTAAATCCCACCTGGAACTACTGCTGAGGAGGCAGTCCTGTCCTCAGTGCAACAAAGAGGACTTTGACTCTCAGGAGTCCCTGCTGCAGCACTTGACCATACActacaccaccacctccacacaGTATGTCTGTGAGAGCTGTGATAAACAGTTCTCTTCTGTTGATGATTTGCAAAAGCACTTGCTGGACATGCACACCTTTGTGCTGTACCACTGCACATTGTGTCAGGAAGTATTTGACTCCAAGGTCTCCATCCAAGTCCACCTGGCTGTCAAACACAGCAATGAGAAGAAAATGTACCGCTGCACGGCATGTGCATGGGACTTCCGCAAGGAGAGTGATCTGCAGATGCATGTGAAGCACAGTCACCTAAGTCAACCCACTGGGCCAGGTGTTGCCAGCAAAGCTCGCAAGTGTATATTCTGTGGGGAGAGTTTTGGTACAGAGGTCGAGCTCCAGTGCCACATCACCACCCACAGTAAAAAATTTAACTGTCGCATCTGTGGGAAGGCCTTCCATGCTATTGTCCTGCTGGAGCGACATCTCAGAGAGAAGCACTGCATGTTTGATGGAGGAAATGGCAATGGAAATGGAGGAAGTCAGAATGGAACTCCAAATGGGGTGAGTCAGAGCTCTAAGCGTGGAGGGGGAGGTTCAACTGCAGCGGCAGAACAGGCTGACTTGCAAAACATGCTACTAAAGGGAGGGGCTCAGGAAACTGCAAACAGCCATGAAGCCagtggaggagaggaagaactAGATGCCTCAGAGCCAATGTATGCCTGTGACATTTGTGGTGCAGCATACACTATGGAGTCACTACTCCAAAATCATCGACTGCGTGATCACAATATAAGGCCTGGGGAGGATGACGCAGGGTCCCGCAAAAAGAAGGCTGACTTCATCAAGGGTAATCACAAGTGTAACGTCTGCTCGAGAACCTTCTTTTCTGAGAATGGCTTGAGAGAACATGCCCAAACTCACCGTGGGCCGGCCAAGCACTACATGTGCCCCATCTGTGGAGAACGCTTTCCCTCtctactcacactcacagagcacAAAGTCACCCACAGCAAGAGCCTGGACACAGGCACCTGCCGCATCTGCAAGATGCCCCTCCAAAGTGAGGAGGAGTTTATTGAACACTGTCAGATGCATCCTGACCTGAGGAACTCCCTGACAGGTTTCCGCTGTGTGGTCTGCATGCAGACTGTTACTTCCACTTTGGAGCTGAAGATTCATGGCACATTCCACATGCAGAAGCTCTCCTCATCAGGTGGTAGTGGTGGGGGAGGAGGTTCGGCCTCATCATCACCCAACGGCCAGCTGCAGGCCCACAAGTTATATAAGTGTGCCCTCTGTCTGAAGGAGTTCAAGAACAAGCAAGAGCTGGTCAAGCTCGATGTCAATGGCCTGCCTTTTGGGCTGTGTGCTGGCTGCATGAACCGAGGCACTAATGGTCAGTCACCCAGTGGCGTTGTAACCCCTCAAGAGCCAGGAGAGAAAGGTGCTTCTGGACTACGCTGTCCTGAGTGTGCTGTGAAGTTTGAGACCTTGGAGGATCTGGAAAGCCATGTTCAGGTAGACCATCCTGAGATGAGCCCAGAAACCAGTGCGGCTAAAAAAGCAACAGAGGCCTCACCTGTTCCTAAAAAGAAAACATATCAATGCATCAAATGCCAAATGACCTTTGAAACAGAACGTGAGATCCAGATCCACGTGGCCAATCACATGATTGAGGAAGGCATCAATCACGAGTGCAAGCTGTGTAACCAGATGTTTGACTCTCCAGCCAAACTCTTATGCCACCTGATTGAGCACAGCTTCGAGGGCATGGGCGGCACCTTCAAGTGCCCCGTCTGCTTCACAGTGTTCGTCCAGGCCAATAAGCTGCAGCAGCACATCTTTGCCGTGCACGGGCAGGAAGACAAGATCTACGATTGCTCACAGTGTCCGCAGAAGTTCTTCTTCCAGACTGAGCTGCAGAACCACACACTGAGCCAGCACGCGCAGTGAGCCCGAGCCCCGCAGGACTCCCGGTTCAGCCCGGAACCCCAACCCAGGCCCGGTGGGGGACGCCCATTTCAACATCACAGCCAATCAAAGTGTCATTTGCTACTCACATGTAAAACTCTAACGATTCCGCCACCAGGCGCAGCTATTACGAACGGTGGGGAACGAATATTAATGGGATatgctattaaaaaaagaaaaggagaagggGGGgaggagatgaaggagaagagaaaaaggtATTCTACGTGCAGTATTTTTTATTGTCCCTGCTTCccatttgtgcattttaattttttattattattttttttgaacaaaagagaaaatggaaaaaagaaactcCATCTGTCTATGATTTTAGTCTCTAGAAATGCTTCACTTACCATGTCCTCTGTTGCTTATTGTATACAACTTCATtggtgccatttttttttcctttaatgcatttctttttttttcccctcttggTTTTCGTACCTTTTATTTCTTGCAGTAAATAGGTACTTGTGCTGTGTTGTGAATGCTTGCCAGTCgtaatatctttttttctcctttctattattattgttatatattttctttttttctaattacagtaaaaaaagacaaaaaacataaattgacaaaaacataatggtTTTGATGGAATTTTGCAGTTCATGGGCCTTATGGTTGTTGTAAAAATGAATATCATTGATTTTCAGTTCAACTGGATGAtgtctgctttttaaatgtgaattaaCCAGATTGCAATAAAACTAGTACagttgaaaataaacaaataaatgaatcatgaataaAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116922 lncRNA downstream 149803 12838220 ~ 12838542 (-) True G98607
TU116902 lncRNA downstream 184737 12802798 ~ 12803608 (-) True G98588
TU116852 lncRNA downstream 214138 12763899 ~ 12774207 (-) True G98552
TU116862 lncRNA downstream 214138 12773138 ~ 12774207 (-) False G98552
TU116850 lncRNA downstream 223064 12763899 ~ 12765281 (-) False G98552
TU117133 lncRNA upstream 45127 13182343 ~ 13182550 (-) True G98790
XR_004578307.1 lncRNA upstream 174179 13311395 ~ 13312346 (-) True LOC117597528
TU117412 lncRNA upstream 174189 13311405 ~ 13318008 (-) False LOC117597528
TU117519 lncRNA upstream 508359 13645575 ~ 13647786 (-) True G99118
TU117536 lncRNA upstream 595735 13732951 ~ 13768470 (-) True G99134
XM_034305410.1 mRNA downstream 3700 12952550 ~ 12984645 (-) False si:ch211-212o1.2
XM_026927394.2 mRNA downstream 3706 12948587 ~ 12984639 (-) True si:ch211-212o1.2
XM_026927455.2 mRNA downstream 74100 12904033 ~ 12914245 (-) True psme3ip1
XM_034305370.1 mRNA upstream 237643 13374859 ~ 13395693 (-) True lonp2
XM_026927072.2 mRNA upstream 261059 13398275 ~ 13404730 (-) False il34
XM_026927073.2 mRNA upstream 261059 13398275 ~ 13404730 (-) True il34
XM_026927304.2 mRNA upstream 274144 13411360 ~ 13440802 (-) True sf3b3
XM_026927145.2 mRNA upstream 338315 13475531 ~ 13491284 (-) True aars1
TU116638 other downstream 564367 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 583064 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 673820 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 1377381 11588001 ~ 11610964 (-) False arntl2
XR_003403495.2 other downstream 2693522 10268477 ~ 10294823 (-) False ttc38
XR_003403539.1 other upstream 299685 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 413464 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 508193 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 627710 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 646339 13783555 ~ 13783624 (-) True LOC113534852

Expression Profile