RNA id: TU154619


Basic Information

Item Value
RNA id TU154619
length 2898
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G130960
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11548962 ~ 11552031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGttcattcaattttattcaattgATTCCagacaattttaaaatacagcCCATCAACATCCCCCACCTTCATGATTCAAAGGGCATTAAACTTAAAAACCAGTCAACTGGTACTGGATAACATCAGAACATCCAGGTCCAGATGATCTCACACAAACTTGGGTTGAGTGccactgtgtaaaataaataaaatcaaatcaggCATCAGGAAAGTTTACATGACTAGCACAATGCAGAGGTAGCCATGGCAACCTCAGAAATAAATGGAACGGAAAAGGGTATAATCAGCAGATTCATTTGGCAGAATCTCTTCATCACAGGTTGCAGGCAAAACAATTTATAAGCATTAACACTACGTACCTGAACATTGCCAGCCTGTCAACTTATCCAATGGACCGCAACTCAACCTGGTGAGATTGTGGCTTGCCTCAACAGGGCACTCAAGTTTACAGGAGGCCAACAGCTTGACCTATCAATGAGTAGACTCCTGTTAGAACAGAAAATATTACCCATGAGGTCTAAAGACTACCTAAATGACCATATCAGACAGAGCTAATATCCAATCTCCATGGGAAAGTCAATGGACATTAAATCATCCCACTGGTCATGGGCactaaaatacacaaatctgTATTAGAACTCACCATTCAAGCATCAAGCATAAGCAGCCAACCTATGGGGGAGAAAAGATGATTAGGGCAAGACTACTGCAGCTATGGAATACTCAGACATCTGAATCCAGATCAGTCATCAAGACTTAGTGTCCTCAACAAGATCAGAGACCTGATTCAAGATCATCCTCTCCAGATCACAGCAGAGAGATCACACAACCAAGTGACTACATACCTGGAGGGAGGACATCCAAAGACAAGGTCAGCATCATCTACACCATCTagatgctgcaaaaaaaaaaaaaaaaaaaattatttaacagcCAGTTGAGGCAGTGATCACATGCATCTGTCTTTACTCGATACATCAGCTAGGAGCGAAAGACATTGCGCATGGTTCTACATGGAGGTTCTGCTGAACTATGCAATCATCACCTGTATCATGTTATACAATTAAAAACTTGAGGTCTAAACTCACCTTAGCATAGGCCCCTCAGCAGCTTCATCactgcaaagagaaaaaaaaaaaaaagaaaaaccatgttcaaaaagcacaatcCTGTTACATTTGCCTACAAGTGGAGAACTGATGCATCAGCTAGGAGCGAAAGACATTGTGCATTGGTTCTACATGGAGGTTCTGCTGAACTATGCAATCATCACTTGCATCAAAATTGCACATTGGGAAAAATAAACCTTAAATCATTACCATTCAGCCAACTTCACTGGGCCATATCATGCACCTGACACAGGCACCCTAGGGGAAGACGACACTTGTTACAATGTgcatactttattaaaaaaaaatatgcttgaTAGACATGCTACTGTTTCAGTACAAATATGTCTTTCACTCTTATTCAGAGAGATTCCCATTGTCTTAACAACAATCATCATAAACAGCAGACACCTTTgcagcatttaaataaatctccAGAAGCTTACCTCTCATTTCATCAGTCCAACATCCTAGTGGAAAATCAAGTCATCCTAggagaaaaaggaaggaaaaattaCTTCAAGAACACACCAGGAGGACTCCAGCAGATAAATACAGTGCCTCAGATTAAATATTTGGTGGTTGCAATTTCATCAGTCTTGGATCAAGAGTAGCAAATAGGGTCATCATAGAGCACACATTAGAAGGGAAAATTTTTAGGACACAAAACATACCTGTATACAAGTACAGCATACAAATTTCCATCAGCCACTGCAAGAAGAAAAGGAGCAGATTTAGCTTTCCTGTCGATGTTAATATCAGAAGAAGAAATGATCAAGCTGCCTCAGATTCAAGTTTTCAGAAATCACTTCTGTCCACTACTCTTATTCATTTCACTCATCACGGgcaataagaggaaaaaagattTTAACAGCACATACCTTCATTTATAGCAGGCCATTCTTTTTAAAGGCTGTAATAAGCAAATAAGCCAACAATTAACCCCTGTAACATGCAAGGTAACGATGTACACAAGCCAAATTCAAGCctcagaaatatattttcagaaacCACTTCTGTCCACTACTCTTactcatttttcttcatcacaGGCTTGGTAGTGTTCATGTGCAGAGGTAACTAATACACTGCATTTTATAGTTTTTGGTACATTATATTACAGCTGATGAATAGCAACAGTGGATGTGAACTTACCAACAGCCGGATGTGCCAGGACCAACTGCTGAATCCAGCTCCTTCTGCAGAACAGACAGAGGAAAAGAAGTTAATCTGTGCTGCATGGCTGCCACGTGGGATGCAGGAAATGAACTACAGAAAAGCCAATAACTACCACACGCAAAATCAGAAATGTTGGCATTCATCAGATTTGCTCAGATGTCCCTACCAACATAATTTTCATCATATGCACGTGAGGAATTGAAATCCATAATTAGCTTTAAACTGAAACACCCAAGCTAAGCTATCGAGTTAGCAAGTTAGCGAGCTAAAACAGGCGCGAAGAGTAATCGTTCAGCTAGTTTAAATCAAATCGcacacaataaaaaagaaaaataacgcATCCACATTTAAAGAGTCTACAATTAAAGCAGAAAGTCTTATGGTTTGATTGCAGAAAACACTAAGACCTAGACACACGTGCAGCTAAAGGCTAAGCTAGCAGACTAGGAAACCCGCAAAGacttattaaaattaaaaaagcgCTTGCACTAAACACAATATCTAAGAAAGCTTAATTAAGGACATATTTACTTAAACGTAcaggagaaaaaataataactattacTAGACAATAGCATTTTAGCAACAAAaaaccactcacacaccatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578615.1 lncRNA upstream 189582 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 600616 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 632337 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 637587 10911164 ~ 10911375 (+) True G130611
TU154225 lncRNA upstream 638755 10909893 ~ 10910207 (+) True G130609
TU154744 lncRNA downstream 125872 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 164801 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 429734 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 440788 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 442383 11994414 ~ 11994800 (+) False foxp3a
XM_026914924.2 mRNA upstream 101078 11436385 ~ 11447884 (+) False cdkn2c
XM_026914915.2 mRNA upstream 101078 11437452 ~ 11447884 (+) True cdkn2c
XM_026914932.2 mRNA upstream 101078 11442035 ~ 11447884 (+) False cdkn2c
XM_026922776.2 mRNA upstream 260044 11219554 ~ 11288918 (+) False elavl4
XM_026927870.2 mRNA downstream 36793 11588824 ~ 11596613 (+) True si:ch211-198n5.11
XM_034306312.1 mRNA downstream 45750 11597781 ~ 11608557 (+) False LOC113538016
XM_026932941.2 mRNA downstream 45879 11597910 ~ 11608557 (+) True LOC113538016
XM_034306314.1 mRNA downstream 46321 11598352 ~ 11608557 (+) False LOC113538016
XM_034306313.1 mRNA downstream 46926 11598957 ~ 11608557 (+) False LOC113538016
TU154218 other upstream 674945 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 985401 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 1190647 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 3236306 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 3577213 7968235 ~ 7971749 (+) True LOC113526371
XR_003403321.2 other downstream 70271 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 70279 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 70279 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 70279 11622310 ~ 11633844 (+) False LOC113530800
TU154756 other downstream 153624 11705655 ~ 11709432 (+) False porcn

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070979 False 781 lncRNA 0.38 2 NC_007119.7 16611136 ~ 16612110 (-)