Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU155938 |
| length | 1378 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 1 |
| gene id | G131987 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 13433917 ~ 13435294 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU155931 | lncRNA | upstream | 11703 | 13420705 ~ 13422214 (+) | True | G131980 |
| TU155919 | lncRNA | upstream | 33637 | 13392525 ~ 13400280 (+) | True | G131972 |
| TU155912 | lncRNA | upstream | 65741 | 13365880 ~ 13368176 (+) | True | G131968 |
| TU155905 | lncRNA | upstream | 108204 | 13325504 ~ 13325713 (+) | True | G131962 |
| TU155899 | lncRNA | upstream | 116411 | 13317298 ~ 13317506 (+) | True | G131956 |
| TU155891 | lncRNA | downstream | 207 | 13435501 ~ 13436958 (+) | True | G131948 |
| TU155890 | lncRNA | downstream | 2628 | 13437922 ~ 13439730 (+) | True | G131947 |
| TU156048 | lncRNA | downstream | 65095 | 13500389 ~ 13500683 (+) | True | G132081 |
| TU156088 | lncRNA | downstream | 135098 | 13570392 ~ 13570972 (+) | True | G132115 |
| TU156119 | lncRNA | downstream | 355177 | 13790471 ~ 13791279 (+) | False | LOC113527348 |
| XM_026926538.2 | mRNA | upstream | 47532 | 13372493 ~ 13386385 (+) | False | tpd52l2a |
| XM_026912780.2 | mRNA | downstream | 28837 | 13464131 ~ 13489999 (+) | True | si:dkey-70p6.1 |
| XM_026912789.2 | mRNA | downstream | 28837 | 13464131 ~ 13489999 (+) | False | si:dkey-70p6.1 |
| XM_034306380.1 | mRNA | downstream | 88427 | 13523721 ~ 13541674 (+) | False | emilin3a |
| XM_026924721.2 | mRNA | downstream | 102117 | 13537411 ~ 13541674 (+) | True | emilin3a |
| XM_026913672.2 | mRNA | downstream | 181310 | 13616604 ~ 13685739 (+) | False | magixa |
| trnae-cuc_18 | other | upstream | 64298 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| trnaf-gaa_25 | other | upstream | 369795 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnav-cac_9 | other | upstream | 371909 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnad-guc_1 | other | upstream | 1051847 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
| TU154763 | other | upstream | 1723372 | 11709454 ~ 11710545 (+) | False | porcn |
| TU156117 | other | downstream | 269962 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| TU156645 | other | downstream | 886878 | 14322172 ~ 14323450 (+) | True | G132595 |
| trnae-cuc_19 | other | downstream | 1544539 | 14979833 ~ 14979904 (+) | True | trnae-cuc_19 |
| TU157849 | other | downstream | 2566767 | 16002061 ~ 16011604 (+) | False | G133631 |
| TU157866 | other | downstream | 2566767 | 16002061 ~ 16018783 (+) | True | G133631 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00071202 | True | 113 | miRNA | 0.53 | 1 | NC_007119.7 | 23122762 ~ 23122874 (-) |
| grasscarp (Ctenopharyngodon idella) | CI01000001_04901365_04901652.mRNA | True | 1293 | mRNA | 0.43 | 1 | CI01000001 | 4901275 ~ 4902567 (+) |
| grasscarp (Ctenopharyngodon idella) | TU93371 | True | 665 | lncRNA | 0.43 | 4 | CI01000013 | 7339729 ~ 7340751 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU2399657 | True | 1834 | lncRNA | 0.41 | 2 | NC_048592.1 | 5071567 ~ 5073424 (-) |
| eurasian perch (Perca fluviatilis) | TU297713 | False | 1069 | lncRNA | 0.43 | 3 | NC_053133.1 | 15773679 ~ 15776903 (-) |
| tiger barb (Puntius tetrazona) | TU93371 | True | 617 | lncRNA | 0.50 | 1 | NC_056706.1 | 11523022 ~ 11523638 (-) |
