RNA id: TU93371


Basic Information

Item Value
RNA id TU93371
length 617
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G63065
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11523022 ~ 11523638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAATTCCTAACCGTACTGCCACCGCGGCACACAAATCCCAGAGACCCAAAAGAAGGAGGACAATAGCCACGGCCGCTTGAATTGAGGCTGCAGAATCATATAGCCGTGCAGCTCTTAAAGGCAGTGAATATAGGCCACTGGTCGGCCTGCTCTGCGCAATATATGCGTTGGTATTTGACTGCGGTTCACGCGAAATCGAAACAGAAGACAGTGTAGAAACAACACAGCGATTGTAATTTTGACGTTTTGTCGTCGGCGGGTTGTCAAAAGGCATTACGACATCCCTCTTTGCGGTACTCTTTGAAGAGCAGCCTGCTCCGGTGTGCGCGCGTCACGGAGGGTGGTGACACGGGCCCGCCGCTCTGCGTGTTCACGGCGGACCTTGATTTAATATCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGGGCCTTACAACGGCGAACCTGAATCGTTAGGAAAAATGAGCAGCAGAGACGCGCAGATCCAGAGTAAAGGCTAGTGAAGCCAAAGAGCTGCACAGGAACTGAGGCCGCTTGGTTTGCAGGCGCATGATAGGAATATTAATTTCGGGAGCTGACAGGAATGTGAAATtccacttatatatatata

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93299 lncRNA downstream 81026 11437746 ~ 11441996 (-) True G63014
TU93312 lncRNA downstream 81204 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA downstream 81204 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA downstream 81204 11432781 ~ 11441818 (-) False G63014
TU93256 lncRNA downstream 246108 11276359 ~ 11276914 (-) True G62992
TU93377 lncRNA upstream 10911 11534549 ~ 11534772 (-) True G63071
TU93378 lncRNA upstream 12405 11536043 ~ 11536517 (-) True G63072
TU93379 lncRNA upstream 14374 11538012 ~ 11538299 (-) True G63073
TU93380 lncRNA upstream 15873 11539511 ~ 11539833 (-) True G63074
TU93374 lncRNA upstream 20351 11543989 ~ 11545449 (-) True G63068
XM_043246486.1 mRNA downstream 18990 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 71576 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 130351 11357175 ~ 11392671 (-) False magixa
XM_043246404.1 mRNA downstream 130353 11351304 ~ 11392669 (-) False magixa
XM_043246480.1 mRNA upstream 45910 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA upstream 45910 11569548 ~ 11575195 (-) True ptk6a
XM_043246446.1 mRNA upstream 55524 11579162 ~ 11615271 (-) True nol4la
XM_043246525.1 mRNA upstream 151636 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 219501 11743139 ~ 11747881 (-) True wasb
TU93259 other downstream 177164 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 391815 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 532318 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 982731 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 1044337 10440764 ~ 10478685 (-) False G62826
TU93421 other upstream 38640 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 38640 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 38640 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 254633 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 273492 11797130 ~ 11797202 (-) True trnaf-gaa_1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072452 False 2275 lncRNA 0.40 1 NC_007119.7 23121513 ~ 23123787 (-)
rainbow trout (Oncorhynchus mykiss) TU2399657 True 1834 lncRNA 0.41 2 NC_048592.1 5071567 ~ 5073424 (-)
eurasian perch (Perca fluviatilis) TU275665 True 2629 lncRNA 0.42 2 NC_053131.1 17071234 ~ 17097020 (-)
striped catfish (Pangasianodon hypophthalmus) TU155938 True 1378 lncRNA 0.48 1 NC_047602.1 13433917 ~ 13435294 (+)
mexican tetra (Astyanax mexicanus) TU106712 True 2154 lncRNA 0.43 2 NC_035905.1 10189740 ~ 10192215 (+)