RNA id: TU158260


Basic Information

Item Value
RNA id TU158260
length 3002
lncRNA type sense_over
GC content 0.40
exon number 6
gene id mtmr3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16580257 ~ 16621766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCACGGCTCGAGGCTGGTGGTAGAGACGCGGTGATGACTGTGTAGTGCTGTGACTGAGTTTGCAGATGGATACGAGGTGTAATGTGCTAGTTGAGTTGTTAATTCTTTTTTGTGATTCttagaagaaagaaataatCGGATCCGAGGTTCCCAAAAGATTTCAATGTCATAACGCTATGGGAGATGTTCCATCACTGAAGTGTCCAACAGTTTGCCCATTTTGTCTTATCCAGCTGCAGGTCAAGTTGGGGGAGTGACAGTCAAAAGCCAGCAACAGTGATCCATACTCCTTCATCTGGGGTCATGGAGGAGGAAGGCCAGCAAAGTCTGGAGTGTGTCCAGGCCAATCAGATCTTCCCAAGAAGGCCCCCTGTTCTGGAGGAGGAGGCTCTACAGGTGCCCTTCCCAGAGCTGCATGGAGAGTTTACAAAGTATGTGGGGAGAGCGGAGGATGCAGTCATTGCCATGTCCAGCTACCGCCTACACATCAAGTTTAAAGAGTCCATAGTCAATGCCTGACAGTGAGCCAGTGCAAGGATGTGGATGACTGAGAGAAAGTGACAAGGGTAGATGTCGAATGGAAAAATGTTCATGTCTgtatgagtgagagaaagattaATCACTTTTCATATATTCATCATGCCCATGCCTACATTAAGTCAATAAATAATATGAGAAAAGAAACATCACATCTGGCCATATTTTGATACAGGCAGCAGCATTCTTGTGGTGTGCAAATTGGGGGGCAGCACAAAGGTCAAAAAAGTCTTAGGAACGgttggtttttactctcatgcaggcgGGAATGGGCAcccagatatgaagctcatgggacTAAATAAAGATTATACATGTTCAGTACAACTCTATTAAAAGTCTTAATCTATCATGTACACAAATCAGGTACTTGGGTTTGCAGAGAAAACCCATTTTACACCAAGCATCTAGCACATGTCTAGCACATCATAACATCTCTCCTTTTCATTTTGGGCTCGGTTCTGTTCTTGCATGGAACATTTAATTCTGTGTTTTCATTCGGTGTAGTAAATACAGTTAGgtctataaatatttggacaataacaaagttattgttattttagctttcTACCACAGTAttttggagttgaaattaaatgatGAATCAGTTTTAggggctcaaaagtaactgtaAAAAAGTAATAACAAGCGTAagttaaattgtcatttttaacactgcaGATCCTTTGCTGCCAATGATTgcccgaagtctggaacccatagcCATTCCCAGACACTTGGTTTCTTCCTTGATGATGCTCtgcatcatcaataaatacaagggaaccagtcGCTATTGACAGCCATACCTCCACCTAACACTACGTCCACCATCTTTCACAAAagaggtggtacgtgtcaaatcATGAGCAGTTCTTTCCATTCTCCATACTCCtttatttactctggtgaagacttctcttgattgttgactttgacacagatacatcTGCTTTCTGGCGgatgttcttgatctggccaactgtttgtccaccacagttgttttcacTGGTGGTCTGGGctttttggtgttcctgagctcaccagtgcatttttctttttgagtaTGTACCAAATAGTGGCCAcattcaatgttttttgttaatgggtttgttttgatttttttagcctaatgatggcttgcttcactggcagtgacagattccaaatgcaaatgctatACATGAAATAAACTCCGTAGTCGTAAGTGAAAttatgagggaataacacacctggccatggaacagctgagcagccagttgtccaattacttttgatctCTTAAAGGGGGAGGggcacatataaaaagtgctgtaatacCAATAGTATTCACtcaatttggatgtaaataccctcaaattaaagctgaatgtgtgcactttattcattatttaagaGTGTAGTGAATATTTGGCTAAAATATGTCTAAATAAGGGAAATACCTACAAATGGCCAAGGAATTCTTGTGCCAAGCCAGAAAAGGGTGTTGTCTTCTTTTGCAGTAGTAGAATGTGTGAATTCAGGAATGTGTGGCATCACAAAGTTGGATAAGTTGGCTAGTACTGACACAGTTCTAGTAAAGCATGTATGCCCTTGAGACTGATGTGACATGTTGACCTTGTTCACACTCATAtggatattttattacagtgaaaGTCTTTCTGTTTTAGTGTGGGTGGacctatttttaaaaacaccaTTTTAGGGGACAGGAATTGTCTTTGAAAAATGGTGTGGTAAAAAGATTTCGGAAGTAGTGAGGCCAGCAGTGTAGAAATAGTTAAGCCATGGGCACTCTACATGTCTTTCAGAATATCAGAATCACTGACCCTTTCACACTACACGACTTGAATTGCTTACGATTAGTTCAAGGTGAAACCTTGTCTATAATGTGATTTTGAGATTTTGTCACTATTTTAGTGcagaaataaggaaaaaaagtgaaataagagaaaatgcGGAGGGAATATTGGTTGGGGAGATGTGGACAGCAAGGATTGTCAGTTCTGTAAACCAGAGGGATAGTCGAAAAAAGTAGCTGTTTTTTTATACTCTGCGATGCCAGGAATTATCACATCAGAGTCGCCTAGCCCCAAAATAAGTCGGCAACTGGGAAATCATGGCTGAATCAATTAATCATTAACTGTGGGTTATAAATAAGAATGGCtgaaacaaatatatttatttatttatttatttattttttcaataatatgatgtaaaataaaactgtgagTAACAACTTTTACTATTTTGTTACTCTACTGACCTTCTCCTCTAGGGTTAATAATGATTGTTTTGACAAGTCAAAACTTGTCAGCCTAAACTAGACAGGCCTTCTTACAATAAGAAACTGCTACACAttttactacaaaaaaaagCCCCTCCCATGAAATATAATATGAGGCTATAACATCAACCTTTCAGTATATTTCATTTACCAAGCAGGAGTTTTGAGGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158165 lncRNA upstream 139930 16439266 ~ 16440523 (+) True G133890
TU158107 lncRNA upstream 218204 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 407920 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 408953 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 409856 16164686 ~ 16170597 (+) True G133721
XR_004578591.1 lncRNA downstream 45464 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 45464 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 45464 16643490 ~ 16663314 (+) False LOC117597830
XR_004578593.1 lncRNA downstream 45464 16643490 ~ 16663314 (+) False LOC117597830
TU158518 lncRNA downstream 261960 16859986 ~ 16862952 (+) False gucd1
XM_034306836.1 mRNA upstream 1764 16460558 ~ 16578689 (+) False cux2b
XM_034306837.1 mRNA upstream 1764 16460559 ~ 16578689 (+) False cux2b
XM_034306839.1 mRNA upstream 1764 16460559 ~ 16578689 (+) False cux2b
XM_034306834.1 mRNA upstream 1764 16461098 ~ 16578689 (+) True cux2b
XM_034306835.1 mRNA upstream 1764 16461098 ~ 16578689 (+) False cux2b
XM_026910736.2 mRNA downstream 118107 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA downstream 118107 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA downstream 118107 16716133 ~ 16737984 (+) False bicdl1
XM_026910769.2 mRNA downstream 261950 16859976 ~ 16867175 (+) False gucd1
XM_034306615.1 mRNA downstream 439795 17037821 ~ 17050280 (+) True LOC113524948
XR_004578524.1 other upstream 160944 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU157866 other upstream 561670 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 568849 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1600549 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2257003 14322172 ~ 14323450 (+) True G132595
XR_003402556.2 other downstream 118107 16716133 ~ 16735335 (+) False bicdl1
TU158711 other downstream 698085 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1432949 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1838184 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2889461 19487487 ~ 19502643 (+) True G135287

Expression Profile