RNA id: TU158606


Basic Information

Item Value
RNA id TU158606
length 281
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G134242
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17016254 ~ 17016534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacaggatATGATTTCTCTGATCTCCAAGTCCCTTTAATGATCATTTTGCTCTTGTTTTCCTTGCAGATGGCATCCGGACTCCAAAGTTGACTGGAAGACCATTCCAACATAATGTTAAATTTTATTGCATATCCAATCTTCTTAAACGCAACACAACTGACCCCCGTTATCTGAGGAAACAACAGGGCAAAAATGATTCTCCTTCCCATAAAAAGAGCACAATTATTTCATTCAGTACATCACGCTGAAATCAGTGGGGTCGACATTACATGGTGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158605 lncRNA upstream 198 17015751 ~ 17016056 (+) True G134241
TU158602 lncRNA upstream 24287 16991767 ~ 16991967 (+) True G134238
XR_003403421.2 lncRNA upstream 41317 16951548 ~ 16974937 (+) True LOC113533561
TU158594 lncRNA upstream 51197 16964834 ~ 16965057 (+) True G134230
TU158519 lncRNA upstream 147486 16859986 ~ 16868768 (+) True gucd1
TU158609 lncRNA downstream 3145 17019679 ~ 17019896 (+) True G134245
TU158671 lncRNA downstream 194418 17210952 ~ 17211186 (+) True G134301
TU158673 lncRNA downstream 216641 17233175 ~ 17233424 (+) True G134303
TU158714 lncRNA downstream 281634 17298168 ~ 17355660 (+) True G134344
XR_004578574.1 lncRNA downstream 296365 17312899 ~ 17330663 (+) True LOC117597810
XM_026910769.2 mRNA upstream 149079 16859976 ~ 16867175 (+) False gucd1
XM_026910736.2 mRNA upstream 278270 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA upstream 278270 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA upstream 278270 16716133 ~ 16737984 (+) False bicdl1
XM_034306633.1 mRNA upstream 394488 16587117 ~ 16621766 (+) False mtmr3
XM_034306615.1 mRNA downstream 21287 17037821 ~ 17050280 (+) True LOC113524948
XM_034306703.1 mRNA downstream 44524 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA downstream 44527 17061061 ~ 17081950 (+) False LOC117597835
XM_026925931.2 mRNA downstream 332782 17349316 ~ 17352590 (+) True seta
XM_026925238.2 mRNA downstream 394574 17411108 ~ 17449062 (+) False crb2b
XR_003402556.2 other upstream 280919 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 415669 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 421851 16580257 ~ 16594403 (+) False mtmr3
TU158711 other downstream 279577 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 1014441 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1419676 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2470953 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3205881 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile