RNA id: TU158671


Basic Information

Item Value
RNA id TU158671
length 235
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G134301
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17210952 ~ 17211186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaatatttctgagatgaaagaaagcaatcctagttatattatctacatgagcttcaaaagaaagactagagtcgataatcacaccaaggtcttttactgctgcagatgatgaaacaaaaaggtcatccagagtcattatgtaatcagaaagcttacttctaactgcatgtggccctagtacaagtacttctgtcttgtcagaattaagtaagagaaagttaataagcatccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158609 lncRNA upstream 191056 17019679 ~ 17019896 (+) True G134245
TU158606 lncRNA upstream 194418 17016254 ~ 17016534 (+) True G134242
TU158605 lncRNA upstream 194896 17015751 ~ 17016056 (+) True G134241
TU158602 lncRNA upstream 218985 16991767 ~ 16991967 (+) True G134238
XR_003403421.2 lncRNA upstream 236015 16951548 ~ 16974937 (+) True LOC113533561
TU158673 lncRNA downstream 21989 17233175 ~ 17233424 (+) True G134303
TU158714 lncRNA downstream 86982 17298168 ~ 17355660 (+) True G134344
XR_004578574.1 lncRNA downstream 101713 17312899 ~ 17330663 (+) True LOC117597810
XR_004578638.1 lncRNA downstream 165117 17376303 ~ 17378236 (+) True LOC117597877
TU158788 lncRNA downstream 175078 17386264 ~ 17398372 (+) False LOC117597787
XM_034306703.1 mRNA upstream 129002 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA upstream 129002 17061061 ~ 17081950 (+) False LOC117597835
XM_034306615.1 mRNA upstream 160672 17037821 ~ 17050280 (+) True LOC113524948
XM_026910769.2 mRNA upstream 343777 16859976 ~ 16867175 (+) False gucd1
XM_026910736.2 mRNA upstream 472968 16716133 ~ 16737984 (+) True bicdl1
XM_026925931.2 mRNA downstream 138130 17349316 ~ 17352590 (+) True seta
XM_026925238.2 mRNA downstream 199922 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA downstream 199923 17411109 ~ 17449062 (+) True crb2b
XM_026925239.2 mRNA downstream 400200 17611386 ~ 17621646 (+) True lhx2b
XM_026925790.2 mRNA downstream 694618 17905804 ~ 17916639 (+) True enkd1
XR_003402556.2 other upstream 475617 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 610367 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 616549 16580257 ~ 16594403 (+) False mtmr3
TU158711 other downstream 84925 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 819789 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1225024 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2276301 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3011229 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile