Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU158711 |
| length | 773 |
| RNA type | TUCP |
| GC content | 0.47 |
| exon number | 1 |
| gene id | G134341 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 17296111 ~ 17296883 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU158673 | lncRNA | upstream | 62687 | 17233175 ~ 17233424 (+) | True | G134303 |
| TU158671 | lncRNA | upstream | 84925 | 17210952 ~ 17211186 (+) | True | G134301 |
| TU158609 | lncRNA | upstream | 276215 | 17019679 ~ 17019896 (+) | True | G134245 |
| TU158606 | lncRNA | upstream | 279577 | 17016254 ~ 17016534 (+) | True | G134242 |
| TU158605 | lncRNA | upstream | 280055 | 17015751 ~ 17016056 (+) | True | G134241 |
| TU158714 | lncRNA | downstream | 1285 | 17298168 ~ 17355660 (+) | True | G134344 |
| XR_004578574.1 | lncRNA | downstream | 16016 | 17312899 ~ 17330663 (+) | True | LOC117597810 |
| XR_004578638.1 | lncRNA | downstream | 79420 | 17376303 ~ 17378236 (+) | True | LOC117597877 |
| TU158788 | lncRNA | downstream | 89381 | 17386264 ~ 17398372 (+) | False | LOC117597787 |
| XR_004578546.1 | lncRNA | downstream | 89417 | 17386300 ~ 17390728 (+) | True | LOC117597787 |
| XM_034306703.1 | mRNA | upstream | 214161 | 17061058 ~ 17081950 (+) | True | LOC117597835 |
| XM_034306704.1 | mRNA | upstream | 214161 | 17061061 ~ 17081950 (+) | False | LOC117597835 |
| XM_034306615.1 | mRNA | upstream | 245831 | 17037821 ~ 17050280 (+) | True | LOC113524948 |
| XM_026910769.2 | mRNA | upstream | 428936 | 16859976 ~ 16867175 (+) | False | gucd1 |
| XM_026910736.2 | mRNA | upstream | 558127 | 16716133 ~ 16737984 (+) | True | bicdl1 |
| XM_026925931.2 | mRNA | downstream | 52433 | 17349316 ~ 17352590 (+) | True | seta |
| XM_026925238.2 | mRNA | downstream | 114225 | 17411108 ~ 17449062 (+) | False | crb2b |
| XM_026925237.2 | mRNA | downstream | 114226 | 17411109 ~ 17449062 (+) | True | crb2b |
| XM_026925239.2 | mRNA | downstream | 314503 | 17611386 ~ 17621646 (+) | True | lhx2b |
| XM_026925790.2 | mRNA | downstream | 608921 | 17905804 ~ 17916639 (+) | True | enkd1 |
| XR_003402556.2 | other | upstream | 560776 | 16716133 ~ 16735335 (+) | False | bicdl1 |
| TU158261 | other | upstream | 695526 | 16580453 ~ 16600585 (+) | False | mtmr3 |
| TU158258 | other | upstream | 701708 | 16580257 ~ 16594403 (+) | False | mtmr3 |
| TU158254 | other | upstream | 701708 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU158256 | other | upstream | 701708 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| XR_003403426.2 | other | downstream | 734092 | 18030975 ~ 18048889 (+) | True | vdac3 |
| TU159255 | other | downstream | 1139327 | 18436210 ~ 18461934 (+) | False | pbx3b |
| TU159806 | other | downstream | 2190604 | 19487487 ~ 19502643 (+) | True | G135287 |
| XR_004578531.1 | other | downstream | 2925532 | 20222415 ~ 20442191 (+) | True | LOC113533440 |
| XR_004578533.1 | other | downstream | 2925532 | 20222415 ~ 20442191 (+) | False | LOC113533440 |
