Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924161.2 |
| length | 1194 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | ap3s1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 14921143 ~ 14937444 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| GO:0008565 | obsolete protein transporter activity | molecular_function |
| id | description |
|---|---|
| K12399 | AP3S; AP-3 complex subunit sigma |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157035 | lncRNA | upstream | 96780 | 14821982 ~ 14824363 (+) | True | G132968 |
| TU157022 | lncRNA | upstream | 176997 | 14742482 ~ 14744146 (+) | True | G132959 |
| XR_003403098.2 | lncRNA | upstream | 180181 | 14722430 ~ 14740962 (+) | True | LOC113529916 |
| XR_004578523.1 | lncRNA | upstream | 437407 | 14474642 ~ 14483736 (+) | True | LOC117597773 |
| TU156653 | lncRNA | upstream | 593274 | 14327652 ~ 14327869 (+) | True | G132603 |
| TU157181 | lncRNA | downstream | 5633 | 14943077 ~ 14982873 (+) | False | commd10 |
| TU157332 | lncRNA | downstream | 272071 | 15209515 ~ 15209846 (+) | True | G133220 |
| TU157377 | lncRNA | downstream | 361740 | 15299184 ~ 15299387 (+) | True | G133260 |
| TU157435 | lncRNA | downstream | 406310 | 15343754 ~ 15344031 (+) | True | G133306 |
| TU157456 | lncRNA | downstream | 417017 | 15354461 ~ 15363971 (+) | True | G133307 |
| XM_026924381.2 | mRNA | upstream | 641862 | 14272988 ~ 14279281 (+) | True | prf1.5 |
| XM_026924399.2 | mRNA | upstream | 641862 | 14272988 ~ 14279281 (+) | False | prf1.5 |
| XM_026924390.2 | mRNA | upstream | 641863 | 14272988 ~ 14279280 (+) | False | prf1.5 |
| XM_026924367.2 | mRNA | upstream | 651714 | 14266625 ~ 14269429 (+) | True | mpeg1.1 |
| XM_034306457.1 | mRNA | upstream | 689014 | 14200113 ~ 14232129 (+) | False | slc20a2 |
| XM_034306984.1 | mRNA | downstream | 2857 | 14940301 ~ 14951997 (+) | False | commd10 |
| XM_026914974.2 | mRNA | downstream | 2858 | 14940302 ~ 14982884 (+) | True | commd10 |
| XM_026918352.2 | mRNA | downstream | 140226 | 15077670 ~ 15112818 (+) | True | dmxl1 |
| XM_034306823.1 | mRNA | downstream | 198242 | 15135686 ~ 15147422 (+) | True | prr16 |
| XM_026926927.2 | mRNA | downstream | 198242 | 15135686 ~ 15147422 (+) | False | prr16 |
| TU156645 | other | upstream | 597693 | 14322172 ~ 14323450 (+) | True | G132595 |
| TU156117 | other | upstream | 1213593 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| trnae-cuc_18 | other | upstream | 1551524 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| trnaf-gaa_25 | other | upstream | 1857021 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnav-cac_9 | other | upstream | 1859135 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnae-cuc_19 | other | downstream | 42389 | 14979833 ~ 14979904 (+) | True | trnae-cuc_19 |
| TU157849 | other | downstream | 1064617 | 16002061 ~ 16011604 (+) | False | G133631 |
| TU157866 | other | downstream | 1064617 | 16002061 ~ 16018783 (+) | True | G133631 |
| XR_004578524.1 | other | downstream | 1465304 | 16402748 ~ 16419509 (+) | False | si:ch211-166a6.5 |
| TU158258 | other | downstream | 1642813 | 16580257 ~ 16594403 (+) | False | mtmr3 |
