RNA id: XM_026924399.2


Basic Information

Item Value
RNA id XM_026924399.2
length 2194
RNA type mRNA
GC content 0.43
exon number 3
gene id prf1.5
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14272988 ~ 14279281 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACATAAATCCTGTTATGATATCAATTTGCCTTCTCCGTCTACATAATCCTGTCTCATCCCAAGAATGTGGCACACCCTCACATGCCACAATCGTTTAAGCTCCCTCCCACAGTACAGATGGGACGCACTAAAAATATCAAGAAAAAACCAGTTAGCAGATGGATTCTGTCGACTCCGGCAAAAACGGAACGAAAGGAAAACACTCCCTGCCAATGCCTCACCCTTTCAGAGGAAGATTTTCAGCTGGAGCATTCCTAACACCAAGGCAAAGTGAGACCGTAACAGTCTGTGGAAGCAGTCATGGGCCATCATAAGTGCGCTGGTCTCCACTTATTACTCTGTATCAGCACAATTCTGAGCCTCTGTCATCAAAGCTCAGCCTGCCGCCTGGGAACAGAGACAGAATGTGAGAAAGCACCCTTTGTGCCTGGCTACAACCTTGCAGGAGAAGGATTTGATGTAGTTAGGCTGCAACGCAAAGGTGCCTATTTGATAAACGTCAAATCCCAGAGGTCTGACAACTGCACATGTACCGTGTGCAAGAATCGCTTCCAAGGAGGACAGGTGCAGAAACTTCCCTTGGCCATTGTGGACTGGCGTCCTTTCAGCCGCTGCAACAAACAGCTGTCAAGTGCTCTTCACCATTCCATTGATTCACTTATCAAAAGCTCCACATCACTAATCAACAATAACTGGGGGATGGACCTTAGCCTGGATGATTTGGGCAAGGCTGTTTTAGGAGGGAGCCACTCGGATATAGCTAAGTTTGCCCAATCACAGCACACGATGGACAAGGCGACCTTTGCTCTCCATGAGATCAGCTGCACTTATTACAGCTACAGGGTAATGGATCAGCCAGAGCTCAGTGCAGAATTTACTAAACGTTTACTTCAACTACCTAGACACTACAGTGAGAAAACGAAATCCCAGTATCGGAGGATTATCGATACATATGGCACCCATTACATCCGTCATGTCTATTTAGGAGGACGTGTGAGACAAGTCACAGCCTTCCGAACCTGCCTTGCAACCCTAAAGGGCTTTATGGAGTCTGATATAAAGAACTGTCTGAACATTGACTTAAAAATGGCTCTAGGATTTCTGCCTGCAAACACATCACTTTCTTATAAATGCTCCAATATTCTCAAGGATAACATGAGCATGGGCTTCTATCAGGGCTTCCTGACGCAGAAGTTGGAGGTCTTGGGTGGCGAAAGTTACTTCCCAGACCTTGCGTTTCATCAGAGTCCAGCCGAAGCTTATGCAAGCTGGATGAACAGCTTGCGTGTGAACCCAGATATAATTTCATATGCCATTTTTCCTCTCCATCATCTGGTAGCTGACCCAGAACTAAGTGCCAGCCTGAGGAGAGTTGTGACTGAGTACATTGAAGAGAACAAGCTTCCTTCAGAGCAGAATCAGAACCACGAATGCAAACCAACGCCAAACTTGGACCACAACTGCTGCCCTCTGCGAGCAGGTCATGGCACCTTGACAGTGGTGGTGCATCGGGCCACAGGTCTAAAGGCAGACTTCTTTACTAAAACGGATGGATACGTCAAAGTGTGGTACAATAACATGTATGAGGAGACAGACATAGTGATGGATGATAACAACCCAGAATGGAACATTACTTACAGTTTTGGTTCAATTGAATTTGGTCATGAGTTAATATTTGAGGTATGGGACAGTGATGTAATGTATAATGACATGGTGGGAAGGTGTGTTGTCTATCCTGAACGTGGAATTCACACACATAGTTGTAGATTAACAAAAGGAgtcttttatttcacttacagcGCCCAATGTGATGCTCACCTGGCTGGCCATAGGTGTGGACGATACTCCCCAAAAGCCTGAGTGCCTCCATCAGACAATTacaattttgatattttttactAACTATGAAATATTAAgaatttttgttttactttctcTCTAGCTTTTTCACTTATCTTTACatcaaatttaatttcaaatgaccattaaatataaacatgtgcaaaataTCAGTCGTAGTCTGTTTATTAGTGTTAGCACTTTCTAAATGGAACCATGACTACAGGAAAACCTAACTGTTGCTTTTGGAATAATTGTGGCATTAATTTCTGGATTAATATGAATTCTCGTTTAGTTTACTTTGTACTGCTTAttagtatatatacagtgaggtccgtaaatatttggacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156615 lncRNA upstream 12333 14260279 ~ 14260655 (+) True G132569
TU156452 lncRNA upstream 23173 14249122 ~ 14249815 (+) True G132424
TU156449 lncRNA upstream 23270 14249122 ~ 14249718 (+) False G132424
TU156445 lncRNA upstream 26854 14245576 ~ 14246134 (+) True G132420
TU156430 lncRNA upstream 38734 14233028 ~ 14234254 (+) True G132405
TU156653 lncRNA downstream 48371 14327652 ~ 14327869 (+) True G132603
XR_004578523.1 lncRNA downstream 195361 14474642 ~ 14483736 (+) True LOC117597773
XR_003403098.2 lncRNA downstream 443149 14722430 ~ 14740962 (+) True LOC113529916
TU157022 lncRNA downstream 463201 14742482 ~ 14744146 (+) True G132959
TU157035 lncRNA downstream 542701 14821982 ~ 14824363 (+) True G132968
XM_026924367.2 mRNA upstream 3559 14266625 ~ 14269429 (+) True mpeg1.1
XM_034306457.1 mRNA upstream 40859 14200113 ~ 14232129 (+) False slc20a2
XM_026924161.2 mRNA downstream 641862 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA downstream 641862 14921143 ~ 14936965 (+) False ap3s1
XM_034306984.1 mRNA downstream 661020 14940301 ~ 14951997 (+) False commd10
XM_026914974.2 mRNA downstream 661021 14940302 ~ 14982884 (+) True commd10
XM_026918352.2 mRNA downstream 798389 15077670 ~ 15112818 (+) True dmxl1
TU156117 other upstream 565438 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 903369 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1208866 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1210980 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1890918 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 42891 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 700552 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1722780 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1722780 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2123467 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile