RNA id: XM_026925635.2


Basic Information

Item Value
RNA id XM_026925635.2
length 3645
RNA type mRNA
GC content 0.43
exon number 4
gene id lrif1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13879111 ~ 13885667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGAGCGGTTTATAATGTCGCGTAGACGAAATGGCGCTTGTTTGGGTCGAGCTAGCTAGTGATGTAGCAAGTCGCACCGCTAGCTCTGTTTAGCTAAATTTACTCGATACCACGTCCTTTCAAATGTGACAGCGACTTTATAAAAAGATGCCGGTTATAACCCAGCTGAGGTTAACAAAAATAACGACAGTTTATTTTTCACTGACTGGAAATTAGCAAAGGAAGTGACAAGTCGCTAGCTGGCGCCCACAGTCAACTTCGAGTGAACTACTCATgctgctagctggctaatttaCTGTTCACATTGGAACAGGAGTTTACTACCAGGCAATGCCTGCAGTGGGACCTGAtgggaaaaatgtgatgaagTTGATTCCAGTTAAGAAAGTGAACGGCCACTTTGTTCACACACAGGTTCTTCCTTCGAGAAATGTCTGTGTGCCTGCTCACACATCTCCTGTGCCTTTACCCCAGAACAGAATCCCAACACTTCAGCCAACAGCAGATGGACGTTTCATCTTAAAAACCCCGCTAGAAGTGAACACAGTATTCAATTCAGTGAAAAGTCAGCACAGAGGATCTAATGCCTTATTACAATCCTCTGCCAACCAAGTACATGTCCCACTGATCACCCATAACATGGCACAGAACACATTGCAATCACCCGTTCAGCCTAATAACAAGGCTGTCATCGTTACCAACAGTACACAGCTGCCAAACACTGTGAAACCATCAGCACTTCCAAGTGGACATTACCTTCAGATCCCGTCTAATGCCACAGTTAGAACCCTCCCTGCCTCTGCCCTCCCGTCATCTATCAAAAACAGTATATGTCACTCCACAAATGACTCTAATGCTGTGAAGGGGTTACCAATGGTTCTGTACGTGTCTCCGGTCAGCTCTCTGAAATTAGACCAACAAGCGTCGTGTCTCAAAAACCCCAGTGAGCTTCCTCAGACTTTGAGTCACACATCTACTGCGAGCGTTGTGAAAAGCCCGGAGGAATCCTCTAGGAACAGCCAAGGGGGCACCACTCCAATGAAGTGGGTGGTTGAAGAGAGGGCAGGAAGCAGTGCTCCATATCTCATACCCGTCACCTCGCCCAACATGTCCTCAGACATCTTAAAAGCAGTCAAGCAAATGGAATCATCAAGGTTTCCAACCCAAGTCGCAAAAGAACCTGTGTCTACTGACATCAGCAAAGAAACGATTACTCCAGGaaatgacaatgcccttgtgaTGTGCAACGGTAAAGTGTACTTTGTGGCTAAGAGAAATTCTGAAGTCACCAAGGATATGATTACTAATGCAGAAAGCAAGCTGCACCCCAGAAAATCTCCACAGTCCCCTACTACTTCATTAGGTACAATTACTTCAAACGTGAGTCAAAAGCAAAACCCAAAAAGCCCGGCAGACAGTAAAAAGCCCAGTGATATCATTGAtttgtgtgatgatgatgaagagagCTCAACTTGCACATCATCTGGGAGGATAATTACACCAAGTGATACAGTAAGTGAGCATGACGAAGACTCTAATGTGATATTTGTGTCATACATTCCACCAAAGTCATCAGAGACCGAGACCAGCAAGGAAGTCACAGAGACGACATCTCTGACTAGTTGTGTGAAAGatacagacaacacaaaatTAGACACAGAAAGCATGGAGACAGAGGGTGAACTGAACAGTACCTGTAGCACTGAAGTGGATGCGAGTAAATGTGAAGCTGTGCATGAGAACGGACCTGCTCTTGAAAAAAACGAAGCACCGTCAGAAAAACTTGAAGTAGTTTGTGGTCAACAAACTGATGTTACTGAAAAGtctttTGAGGAAATGGTTCCAGACCAAATACATCAGCCTAAGAGTGATTCTGAACTCAGACGGACTTTTGGGATTACATCAGATTTGAGTGTTTCCTTACAAAAGATAGACGTATCTAAGGAGTCACAGGCATGGGAAAGTCACCTACAGAACGAGAAAAGGTTAATTAACAAACGCACACTAGACGGCATCCGCAAACTGATTCGCGATTCAAAGATTGAGACAAAAATCAAGCAACTGATTCAGACACAGGTGCCCAAACCTGTGAAAACTGGCAAAAGAAAACGGTTGCTGAGGAATGGAGAAGAAAATGGCTCGGATACCTTTTCATTAAGTGACGCACATTCTTCACGTCTATCTAACGGTTTAGTAGAATGTGACTATGAGATTGAGAGTGCGTCAGCTGAACAGAGTACAGACAGTCAGGTCTTTCACACCTGTCAAGGTGCAGAGGAAGAAACCCCATCCACCAGTGGTGCTTGTAAAGTATCAGACATAACCACTGATCTCCTCTGTTCCTCCTCCATGTTCGAGCCTGTACAAACTCATACTGCCAAGGATCAAAGTGACAGTCCAGATTGTTGTTCAGGGTTACGGAAAACCCTGCCTCGTTCGAGCAAGGGGTGTGGGAAAATGTGCACGGCATGTCCTTGTGGAACTAAGGTAGGAGGAGTGGCTGGAAATTCAGCATCTAAACCACGAGAGAACCCAAATCCCTGTTCCAGCGTTAATTCATCTAAAGGTGTTTCAAGTGAATCAAACAGAGAATCTGCAGTTGACAGATTGGCAGATTCGGTTTCAAGctcaacaaacaacaacagtgCATCAGGAAAGTCAGGAGACGAAATGACACATGGCAGCCAATCGCATGTTAGTAAGGAAGTTAAAGGTACTTTGCCCACTGCTACCTTTTCGACAAGTCAACCAGCAATGGCAGGAACATGGAGTTGCAGTTCAAGGAGCACACAAGACAAGACTCGTGATAAATCTGCAAGCAGCCAGTCAGAAACAGGCACTCAGAAACCAAACAAACTGAACGAGGTGAAGACAATTTCGTCCTCAGTTCAGCAGTTATCCTATACGAGTTATAAAATACCTAGCGAACTGTACTCCTCTGTACTGCTGGACCCTGAGGAGATAAAACGACAGGAGAGAATCAAACGCCTTAAAGACCTCCTGCAGGAGAAGGAGGCTGCACTTGAGAAGCTGAGGAAGAGCATGTGAGAGCCACGCGAATCTGAATTTACTTTCGGCAGCAAGATATCAGTGGAGAAGTTGTCAGTATATGTAAAGCACAAGTCAGTGAAAGGCAGCATCTGGTTATGCATACTTAAGTTTTTTGTGATGTACTTCAGCATCAGTTTGTTttttgaatgtgtttatatatgttgATATATTTACCATTCTCTGTAAGTTTTCTAAACTTAAATGTGTCATGTTCATGAGTTTTGTTACAGGAGAGAATGTATGATGGGCTAGTACATGGCTGAATGTGGCTTCATTTTGcatttctaaattatttaatgtttcagaAGACCCGTACATCTTTGTAACTTAGACACTTTATATACACGTTTCTGAAGGCTGGTATATACATCCTCACTATATTCCATTttgcatgaaataaatattgcatCCATGTCATTTTTGCTTGATAGCAGCATAGCTGATTTCAAAATGAACTTCATACAGTGTAGTAAGGCACATTAACTTCATTCAGTTTGTTTTCCAAAGTTTCTGAGTTGAGGATGTTTTGGGATTGTTCTACAGCTTCATTACACCTTCTTTAATATGTCAATTAAAATTCCTGTgttttgta

Function

GO: NA

KEGG:

id description
K23220 LRIF1; ligand-dependent nuclear receptor-interacting factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156120 lncRNA upstream 80046 13794582 ~ 13799616 (+) True G132138
TU156118 lncRNA upstream 85357 13793156 ~ 13794305 (+) True G132136
TU156121 lncRNA upstream 86953 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 88383 13790471 ~ 13791279 (+) False LOC113527348
TU156088 lncRNA upstream 308690 13570392 ~ 13570972 (+) True G132115
TU156341 lncRNA downstream 5543 13891210 ~ 13948808 (+) False dock8
TU156342 lncRNA downstream 102066 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA downstream 124836 14010503 ~ 14013621 (+) True G132357
TU156411 lncRNA downstream 199985 14085652 ~ 14087881 (+) True G132391
TU156373 lncRNA downstream 231308 14116975 ~ 14120415 (+) True G132361
XM_026937501.2 mRNA upstream 1702 13873546 ~ 13877960 (+) True apex2
XM_026928724.2 mRNA upstream 11542 13838338 ~ 13868120 (+) False csde1
XM_026913277.2 mRNA downstream 4737 13890404 ~ 13948280 (+) True dock8
XM_026913286.2 mRNA downstream 17278 13902945 ~ 13946970 (+) False dock8
XM_026913293.2 mRNA downstream 20894 13906561 ~ 13946970 (+) False dock8
XM_026914857.2 mRNA downstream 64270 13949937 ~ 14022687 (+) True aopep
XM_026924980.2 mRNA downstream 269191 14154858 ~ 14171793 (+) True ercc6l2
TU156117 other upstream 172112 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 510043 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 815540 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 817654 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1497592 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 436505 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1094166 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2116394 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2116394 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2517081 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile