Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026926736.2 |
| length | 1976 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 9 |
| gene id | gnat2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 12314904 ~ 12322876 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007188 | adenylate cyclase-modulating G protein-coupled receptor signaling pathway | biological_process |
| GO:0050908 | detection of light stimulus involved in visual perception | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0001580 | detection of chemical stimulus involved in sensory perception of bitter taste | biological_process |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0005834 | heterotrimeric G-protein complex | cellular_component |
| GO:0001917 | photoreceptor inner segment | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0004871 | obsolete signal transducer activity | molecular_function |
| GO:0031683 | G-protein beta/gamma-subunit complex binding | molecular_function |
| GO:0001664 | G protein-coupled receptor binding | molecular_function |
| id | description |
|---|---|
| K04631 | GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU155063 | lncRNA | upstream | 86578 | 12228214 ~ 12228615 (+) | False | kcnq2a |
| TU155070 | lncRNA | upstream | 88831 | 12226152 ~ 12226362 (+) | True | G131282 |
| TU155067 | lncRNA | upstream | 97979 | 12217004 ~ 12217214 (+) | True | G131279 |
| TU154976 | lncRNA | upstream | 320393 | 11994414 ~ 11994800 (+) | False | foxp3a |
| TU154975 | lncRNA | upstream | 322154 | 11992819 ~ 11993039 (+) | False | foxp3a |
| XR_004578623.1 | lncRNA | downstream | 197018 | 12519894 ~ 12533258 (+) | True | LOC117597859 |
| XR_004578624.1 | lncRNA | downstream | 197018 | 12519894 ~ 12533258 (+) | False | LOC117597859 |
| TU155155 | lncRNA | downstream | 280641 | 12603517 ~ 12604634 (+) | False | rbm15 |
| TU155458 | lncRNA | downstream | 367291 | 12690167 ~ 12712485 (+) | True | G131606 |
| XR_004578634.1 | lncRNA | downstream | 377836 | 12700712 ~ 12701501 (+) | True | LOC117597872 |
| XM_026916796.2 | mRNA | upstream | 41129 | 12257576 ~ 12274064 (+) | True | eps8l3b |
| XM_026928081.2 | mRNA | upstream | 57934 | 12249509 ~ 12257259 (+) | True | atp5pb |
| XM_034306709.1 | mRNA | upstream | 85192 | 12196593 ~ 12230001 (+) | False | kcnq2a |
| XM_026929291.2 | mRNA | downstream | 67379 | 12390255 ~ 12396660 (+) | True | amigo1 |
| XM_026915908.2 | mRNA | downstream | 91318 | 12414194 ~ 12433146 (+) | True | sort1b |
| XM_026926678.2 | mRNA | downstream | 115236 | 12438112 ~ 12447984 (+) | False | nfyal |
| XM_026926693.2 | mRNA | downstream | 115236 | 12438112 ~ 12447984 (+) | False | nfyal |
| XM_026926644.2 | mRNA | downstream | 115236 | 12438112 ~ 12446707 (+) | False | nfyal |
| TU154763 | other | upstream | 604648 | 11709454 ~ 11710545 (+) | False | porcn |
| TU154756 | other | upstream | 605761 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154757 | other | upstream | 605761 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154760 | other | upstream | 607232 | 11705655 ~ 11707961 (+) | False | porcn |
| XR_003403367.2 | other | upstream | 681349 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| trnad-guc_1 | other | downstream | 59123 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
| trnav-cac_9 | other | downstream | 739060 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnaf-gaa_25 | other | downstream | 741174 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnae-cuc_18 | other | downstream | 1046672 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| TU156117 | other | downstream | 1382380 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
