RNA id: XM_026926859.2


Basic Information

Item Value
RNA id XM_026926859.2
length 1527
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC113534124
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13055450 ~ 13061438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggaaagaGTAGAGTGTGAGACCAGCCTCAAAGCAAGtgctaaaaagaaaaagcagagaCTAATCAAATACATTAGCCAACAGCTTAGGTTTTGAAATTTAGATCTCTACATGGGAAGCCAATAATGAGGACAACAATGCATATTATAGCACTCCTTGTGCTTGTTCTTCATGTCCAGCAAACAGTCCCCCAGATGGTGCAGTGTTATGCCGCTTTTCGCCCAACAGATGGAACGTGCAGTAATATTTTGGGGCAAGTGCCACTTGATGATTGTTGCATGAACCCTGCATATGGCTATCAGGATAAAGGAAGTGATTGCAAGTCTTGTAGGTATGCTTCATGGACCACGTGGTCCTCCTGGAGTGCATGCTCAGTGACTTGTACTGAGGGAGTGAGGCAGAGACGACGTGCCTGTTACGGCTTAGGGAGGTGCCATGACCCTCAGCTTGTAGGAAGGATACAAACTGAACCTTGTGAAGACATCAGCTGCTGTCCGAaaaatggAGGATGGTCTGAGTGGAGTGGATGGCATCCGTGCTCAGTTACATGTGAAAGAGGAGtcaaaaagaggaagaggaccTGCTCTAACCCCCCTCCCGTATGCGGTGGTATTTGCCAAGGCAACAACGAGGAAGTCACAGATTGTGACACAGGGATTGTCTGCCCAACTCATGGCGGCTGGTCTGCATGGGGTAACTGGGGTGCCTGTGCAGGGACATGTGAAGTACAGGGGTTTTCTCCACCTCAACAGCAGAGACACAGGACGTGTACAAACCCTCCGCCATCTCTTGTACCACGTGGCAATAATTGCCCAGGCTCAAGCACAGACACTCAACCCTGCACAGGACTGCCTTTTTGTCCAGTTAATGGAAACTGGGGGGCATGGTCGGCGGTCTCTGATTGCTCTGTGACATGTGGAGTGGGACAACAGGTAAAGCAACGTAAATGTGATAATCCTGCACCCAAATATGGAGGCCATGGCTGCCTAGgagaaaacaccaaaacactTCTCTGCACTGTTCCGAAAAACTGCCCAGCGGATGGTCACTGGAATGAGTGGTCTGAATGGTCTCGCTGTGATTCACCAAACCAAAGGACAATTACATGCAAGAATAGATTGGGGAGGCGAAGGCGACTGAGAGAGTGTTTAGGCAGGGAATATGAAGGAGCTTTCTGTGATGGAGATGGTGTAGAGTTCGACCGCTGCTATGACATTCAAGGCTGTAAAGCTGGGCCTGGTCAACAAATACCAAGAGCCCTATGGTCAGAATGGTCTGGATGGAGTTACTGTAAACCTGACTGTGGAGAACTTTCAACGCAGACAAGGAAGCGGGTGTGTATACCTGACATCTCAGAGTACAGTGAGCCCCTTATAGAGATTTTCTCAGGGATCCCAGATATTACCTGTCCACCCTTGGACAAAACAGAAGAGACCAGACCATGTCTAAATCTTCCACCGTGTTAGATCAGGTATATGGTCATCAGTTGCACtcagaaatggaaaataaagtgttaaaagaaGCTTTA

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155597 lncRNA upstream 31604 13022216 ~ 13023846 (+) True G131715
TU155603 lncRNA upstream 49360 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA upstream 49360 13003395 ~ 13006090 (+) True G131721
TU155606 lncRNA upstream 49360 13003395 ~ 13006090 (+) False G131721
XR_004578521.1 lncRNA upstream 113994 12938663 ~ 12941456 (+) False LOC117597771
TU155870 lncRNA downstream 212697 13274135 ~ 13275095 (+) True G131930
TU155897 lncRNA downstream 254005 13315443 ~ 13315663 (+) True G131954
TU155899 lncRNA downstream 255860 13317298 ~ 13317506 (+) True G131956
TU155905 lncRNA downstream 264066 13325504 ~ 13325713 (+) True G131962
TU155912 lncRNA downstream 304442 13365880 ~ 13368176 (+) True G131968
XM_026939856.2 mRNA upstream 60671 12985427 ~ 12994779 (+) True inavaa
XM_026947120.2 mRNA upstream 76084 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA upstream 76084 12978031 ~ 12979366 (+) False c8h1orf194
XM_026928189.2 mRNA upstream 134264 12916438 ~ 12921186 (+) True lhfpl5b
XM_026911429.2 mRNA upstream 257083 12792450 ~ 12798367 (+) True dclre1b
XM_034306692.1 mRNA downstream 52268 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA downstream 52268 13113706 ~ 13134629 (+) False slc38a5b
XM_026930223.2 mRNA downstream 75251 13136689 ~ 13145207 (+) True wasb
XM_026929521.2 mRNA downstream 153028 13214466 ~ 13225319 (+) True gpr173
XM_026925300.2 mRNA downstream 248452 13309890 ~ 13352603 (+) True nol4la
trnad-guc_1 other upstream 673380 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1344905 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1346018 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 498 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 2612 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 308110 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 643818 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1260734 14322172 ~ 14323450 (+) True G132595

Expression Profile