lhfpl5b (lhfpl5,LOC107591869,LOC107745833,LOC102777996)


Basic Information

Item Value
gene id lhfpl5b
gene name lhfpl5,LOC107591869,LOC107745833,LOC102777996
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12916438 ~ 12921186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928189.2
ATGGAGAAAATGCTTCCTGCCACAGAGGCGGTCAAAATCTACCAGACAAACTACGTGAGAAATGCCAGAGCAATTGGTGTCTTGTGGGCAATTTTCAGCATCTGCTTTGCCATCATCACAGTGGTGGTGTTCATTCAGCCCTACTGGATTGGCGACAGTGTCAACACACCACAGTCTGGCTACTTCGGGCTCTTCTACTACTGCATAGGCAACCCCATCACCTCAGAGCTTGTCTGCAAGGGCAGTGTGCTTGACTTTAACTCCATTCCGTCCGGGGCATTTAAGACTGCCATGTTCTTTGTGGGAATCGCAATGCTGCTTAATGTGGCCACCATGGTCTCCTTCagtctcttcttcttctgcagcACAGCCAGTGTGTACAAGATATGTGCATGGATGCAGACCTCATCAGCTGTGCTGTTGGTGATGGGCTGTATGATTTACCCTGATGGATGGGACTCTCCTGAGGTAAAGCGGATGTGTGGCGAGCGGACAAGTAAGTACACACTGGGGAACTGCACAGTGCGCTGGGCCTACATTCTAGCCATCATCTGCATCCTGGATGCCCTCATGCTCGCGCTTGTGGCCTTCACACTGGGAAACCGCCAGGACAAACTGCTGCCTGATGAATTCGAACTGGACTCAGGGGAAGGAAAGGCCTGAATCCAAAAGCTGTTCTGACAACTGTGAAGAATCACAATGGGCATCCTAAAGCCACTGAGTATGACCACTGAGAC

Function

symbol description
lhfpl5 Predicted to be involved in detection of mechanical stimulus involved in sensory perception and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell stereocilium organization and detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in stereocilium bundle. Predicted to be active in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 67.

NR:

description
PREDICTED: tetraspan membrane protein of hair cell stereocilia

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928189.2 True 737 mRNA 0.51 3 12916438 12921186

Neighbor

gene id symbol gene type direction distance location
dclre1b dclre1b coding upstream 118071 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 133281 12775926 ~ 12783157 (+)
LOC113531715 LOC108265567,LOC108414659 coding upstream 254293 12659028 ~ 12662145 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 261755 12651225 ~ 12654683 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding upstream 267331 12646689 ~ 12649107 (+)
c8h1orf194 c5h1orf194 coding downstream 56841 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 64241 12985427 ~ 12994779 (+)
LOC113534124 NA coding downstream 134264 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 140750 13061936 ~ 13062008 (+)
trnaf-gaa_25 NA coding downstream 142864 13064050 ~ 13064122 (+)
LOC117597782 NA non-coding upstream 106700 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 186916 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 203953 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding upstream 214937 12700712 ~ 12701501 (+)
LOC117597859 NA non-coding upstream 383180 12519894 ~ 12533258 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 16118 12937304 ~ 12941456 (+)
G131721 NA non-coding downstream 82209 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 101030 13022216 ~ 13023846 (+)
G131930 NA non-coding downstream 352949 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 394257 13315443 ~ 13315663 (+)
rbm15 rbm15,LOC107731203 other upstream 311733 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 686437 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 920586 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1202406 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1219647 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 783980 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 969218 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1028751 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1400986 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2019115 14940301 ~ 14982884 (+)

Expression


Co-expression Network