RNA id: XM_034306823.1


Basic Information

Item Value
RNA id XM_034306823.1
length 2508
RNA type mRNA
GC content 0.39
exon number 3
gene id prr16
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15135686 ~ 15147422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATGTATAAAGAGCCAAGAGAagaaaacataacattaaaatgcacGAACAAAGTGCGCCGATCGCCATGAGAGGATATAGCTGCAGTCCTTGATTCGGAGTCTTCTTCCAGAGGATGTCAGGGACAGCAAATGCGGAATCGGAGGGAGTCTCCAAAGTTCAAATAAAAAGGCAGATCAAGACAATCGTGGAAGATTTGGAGAACATCTTAGGGGACTTGAAGGATGTAGCGAAAGAACTCAAAGAgGTTGTTCATGAAATAGACTCCCTGACCTCAGACCTCCAGCTGGAGGAGACGGCAAACAGCTCGAAGACTGACACACTGAACAGCAGCTCGAGCAGTACCACAACCACTACCACTGCCTCCAGCATTGAGAGAATCAAGATCTACCCTGAAGACGCCTTCCTCAGACCTCCGCCCATGGCCTCTGGCATGCTCACAGTACTGAAGAGGACCCATCCTCCTCTCCCACCCCCTCGCTTGATGCCAGCCCGAGTCGAGGACCACAGCAAGAGCCTGTCCTCAGGGAACCAAGCCAAAGAGAACAGAACACTCATGCGCAATGGCGTCTTCTCTACAAAGCCCATTAACATACCCGGCAGAGATTCGGTATGCATGCCTAAAAGCTCGACAGAGAAAGGACTGACTCTGATACCCCTTCTGCGGCACAAAAAAAGCCGATGTCCCCAGGTGACACGGGAACGGGTGCGATTCAGCGAAAAGGTCCAGTACCACGGCTACTGCCCGGACTGTGACCTACAGTACGACATTGACAACACAGATATGCACTTACACAGTGAGCTTTTTGACATGAAGCTAAGCCCCATTCATCAATGCTCCTCCATGGCCCCAGCCCATGTTCTGATGGAAAACGGTGGGCTGAGCCTCAGTCACAGCTTTCCTCCTTCAACTCAACCATGTGTGCCTCATCACGCTACTCCAAAACCGCAGAAAACCATACTACGCAAGTCCACCACAACAACTGTTTGATATAAAAATCCCCCTAAAGAGacatttaataatcttttatatgttttatttaatgtcataaGCACTTTCTACTGCAATATAAAATGGATTACctgaagatgaaaaaggaaagaggCTACAGGGATGGCTTACTTCACTGGAAGTCAAAAGAAAGTAAGTGATCGGTCCCTTTGTGACTGAAGAAATACCATATTGATCACCTGATCACCTCAATTTCATGTGATGCTCATTGAGGGCTCACTTCAGAATGCTCTTAGATCGCTACCAAAGGATCCAtcacagacaaagaaaaaagtatgacaAGCAAGACTACTCACCTGAGTCATCTACAATCAGTTTAATCATAATGGCCAAAGGGTATAAAATGTTGTTTGTTGTGGAAACACATATGTGATTCTATCAGacaggtttgtgtttgtgttgcaaaAAATTATCTTTGAAGAGAAGAAGGGAGTCActacaaatattttctttttcattccatATGGTATTCTGTTCTATTTCTGTAGCAGAAATCCTACAGTGAGCTGAAAATTAACTGTAGTGACTATATTGGAGAAAAGTACCATATTGTTGCtgctgaaaatgtgaaaaaaatttaataggATCCACTTTATTCATCTTGTGTAATTAGtatcatatttaaataataataatagcaaagcCCTTTCAAATATTGCCTTTGAATGATATGGTAACTTCTGGAAGATATAGAGAAATTTAAGTGTGAAAACAcaatatatgttttataaaagaggattttgaaattataaaagaacatatttttgatatttcttAGAATGATTTTAAagattgatttcttttttctggtGTGTAATCTCTGCAGggcatttatttacataatttatttatgtattattcaaAGATATAGGAAATGTCTAAAaggtttttgtatattttgtgtgtgtggttatgtgtgattgtgtttcaaaaaacaaattaatttgtttcatgTATACACTctaacaaaaatattggaatTCTCGACAAGCCTGTCATGCATTATGCTCTTTTAATGGGAACATATAAGTGCTTTGtcctaaaatattttataatacagcCCATGTACACTCTAAGATGCACATTTGCATCTGATGACTAATACCACTGTTCCATATCTAGAAATATAGTATTATTTCTGATATTGTGCAACAGCTACAAGCCATTTAAcctagaaataaatatttttactctTCTGAGGATGTTAACAATAGGAGACGTCCAGTAAGTAGAATACTTTTATGTAGTCCACTCTAGTTTCTTGTGTGTTATCTGGAGACAGTGAAAATATTGGAAAAATGGGTAGTCATCTTCTTGgccatttgtaatttatttttaaacagtacCACCACATTTTGAACCAAATAACAGTTGTAAAGATGGACATAACCAACAAAATAGACACAaccataaaaaagaaaaatttctgTGGGTTTTTAAGATGTCATTCTTAGCACTTTGCACTGTAAATCCAAGACTTTATACAGTGGGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157181 lncRNA upstream 152813 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 311323 14821982 ~ 14824363 (+) True G132968
TU157022 lncRNA upstream 391540 14742482 ~ 14744146 (+) True G132959
XR_003403098.2 lncRNA upstream 394724 14722430 ~ 14740962 (+) True LOC113529916
XR_004578523.1 lncRNA upstream 651950 14474642 ~ 14483736 (+) True LOC117597773
TU157332 lncRNA downstream 62093 15209515 ~ 15209846 (+) True G133220
TU157377 lncRNA downstream 151762 15299184 ~ 15299387 (+) True G133260
TU157435 lncRNA downstream 196332 15343754 ~ 15344031 (+) True G133306
TU157456 lncRNA downstream 207039 15354461 ~ 15363971 (+) True G133307
TU157467 lncRNA downstream 231540 15378962 ~ 15384824 (+) True srp19
XM_026918352.2 mRNA upstream 22868 15077670 ~ 15112818 (+) True dmxl1
XM_026914974.2 mRNA upstream 152802 14940302 ~ 14982884 (+) True commd10
XM_034306984.1 mRNA upstream 183689 14940301 ~ 14951997 (+) False commd10
XM_026924161.2 mRNA upstream 198242 14921143 ~ 14937444 (+) True ap3s1
XM_026924171.2 mRNA upstream 198721 14921143 ~ 14936965 (+) False ap3s1
XM_034306381.1 mRNA downstream 9417 15156839 ~ 15163360 (+) True LOC113532232
XM_026929214.2 mRNA downstream 18223 15165645 ~ 15174722 (+) True sncaip
XM_026921965.2 mRNA downstream 47631 15195053 ~ 15209082 (+) True snx2
XM_026921973.2 mRNA downstream 47633 15195055 ~ 15209082 (+) False snx2
XM_034306361.1 mRNA downstream 99516 15246938 ~ 15276940 (+) False prdm6
trnae-cuc_19 other upstream 155782 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 812236 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1428136 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1766067 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2071564 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 854639 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 854639 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1255326 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1432835 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1433031 16580453 ~ 16594403 (+) False mtmr3

Expression Profile