RNA id: XM_026939856.2


Basic Information

Item Value
RNA id XM_026939856.2
length 2264
RNA type mRNA
GC content 0.49
exon number 10
gene id inavaa
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12985427 ~ 12994779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgggtgtgtgtgtgcgcgtgcctgtgtgtgtgtgtgtgtatgtgtgtgtgtaacctgcTGAGCGTCTGTgttaatggattaaaaagttGACAAGCTCATTTACAGACCCATCTCGGAGTGACAACTAAAGAAGAGACTCTGGAACAACTTATATCTCAAAGTAGGAAAAGCATGGACTGCAAGGAAGAAATCAGTGACTCAGACAGTGGGATCATCTTAAATTCTGGTCCAGACAGCCCTACATCTCCTGTGAAGGACCTCAGCACTCACACACGGGCCATGAGGCTTAAGCACCAGGCTCTGGAGGACAGACTGGAGCTGTGTCTTCTGGAGCTAAAGAAACTGTGCACCAGAGAGGCAgaactTACTGGAAAGCTGTCATCTGACTATCCATTGCTGCCGAATGAGAAACCACCACAGATCAGGCGACGCGTTGGAGCATCCTTTAAACTGGATGAAGGGTTGCTTCCCCATGGAGATGGAGAGGAATCAGTGTTGCATTCACTTGAGGCTGATCTGGCCCTCCAGAGGCAGATATATGAAGCAGCCCGAAGGCTGTCCCTTGAGGAACACATCAGCAAGCCGGTGAGGAAGAGCCGACTGCAGCAATGCAAacgtgaagaaaagaaaatgaaggagCTCCAGGAAGCTGTGTTAAAGCACTGCATTAACCACGGCTGTGTTTCACCAGAGACCTGCTGTTCCTCCAGGCAGAGAGACCTGTGCATGTCTGATGACAGCTCGCTGTCTGACGCTGCTGCCCATGATGATGATTTAGAGCCAGGCCCAATGTCCCCGATGGCTGTGGACTCTGTGACTGGTTTCCAGCATGTGCTGACCCTCTCGCCTTGTCACGGAACAAAACATGCAAGTTCCTGCTCCAGCCTGGAATATGAGCGATCACCCATTCAGAACATGCCATGGAGAGAATCCAGTCTAGATCAGCCATATCAGAAACAGAAGAAACTTCCCtctgccagcagcagcaggtcaAGcaGTCCAACAGGAACCTCAATAGACCAGAGACTTGATGACATTCCTCCTGCTCCCCAGTTTGTGTTCAAAAGCCTGGCAATGCGCAACAATAACTCCAACAGCGCCCCCTCCACCCCGAAGCTGCCACTGCGCCGCCACATCTCCCAGTCCTTCAGGTTTCCCAGGACCAAGCCAGAAGTAAGCAAACCGAGCTTAGATCTGAGCCGTGGAAGGACGAAGCTCCCGCGTCGCCGCGTCACTGACTTTGCCTTGGCTTACTCAGTGCAGCGTCTGTATCAGTGCAGCTCAGAGGACAGCAGCTCGGAGCACTCCATATCCTCCTATAGCAGCTCATCCAGCCATGAGTTAACATCTGAGGTGACCAAAGCCTGCCCTCCTCCTTACGGTTTCCACCGCACCGCTCAAAACAAGTCCCACGGCCAGTGCTCCACCACCAACATCCTTCCCAAAAACAACCAAACtgtcaacaaacaaataaacaaaccaacTGTGACCATCTCCTGTCAAGATAATAGCCATGACAGGATGTTGCCAGAGAGAGATATGAGAAAGCTGAACCTGGCTTTGACCTCCCCAAACACAAATAAGCAGCAAGTAGAGGTGACTTCACCTAAGCGTATACTTAAACCCCCTCCACCATACCACAGGCTGACTCGCACACCTTCACTGAAGGAGTATCCCAATCATCCTAGCAGGCTGCTTCCTCGAGATGTGGTGACAAAAGACCTCAGGGCCTGGCATGAGAGGAACAATGCAGGAGAACTCAAGCTTCGGCCACTGGAACGACACGGGTCTATGCGTGCTAAACGCTCACCGGATCAAGAGCCACCACCCTACCACCAGATCCAGTCTCAGAGACAGACTCCTCAGAAAGTGATCCTACAGCGAGCTCCTGATGGAACTCCTCTGCAGTGGTATGAAGAAGAAGACTGCGAGATTGTAAGTCAGGTCTAGACCACAGTCAGCTGAAATGCAGAAGCATCTTTCACCATCTTTGTTCTAtacatatctttttttaaccTATTTATTGAGCCAATGGACTCTGATGCTGTCTGATAGTAAAATGCTGACTCTGAGTAAAAGGTGAAGCTGATGGAGCACAGATTTTCACCAACTGCAGACCCCTTCATCacttaaacactgactgaaatTCAAGTCTGAGAATTACTTAACCGTAAGGCATCATGCCAAATATTCTGTGatgacaatattattattattattattattattattattattattattattattattactggtaAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578521.1 lncRNA upstream 43971 12938663 ~ 12941456 (+) False LOC117597771
TU155563 lncRNA upstream 44796 12937304 ~ 12940631 (+) True LOC117597771
XR_004578530.1 lncRNA upstream 175689 12809123 ~ 12809738 (+) True LOC117597782
TU155457 lncRNA upstream 255905 12712625 ~ 12729522 (+) True G131605
XR_004578634.1 lncRNA upstream 283926 12700712 ~ 12701501 (+) True LOC117597872
TU155603 lncRNA downstream 8616 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 8616 13003395 ~ 13006090 (+) True G131721
TU155606 lncRNA downstream 8616 13003395 ~ 13006090 (+) False G131721
TU155597 lncRNA downstream 27437 13022216 ~ 13023846 (+) True G131715
TU155870 lncRNA downstream 279356 13274135 ~ 13275095 (+) True G131930
XM_026947120.2 mRNA upstream 6061 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA upstream 6061 12978031 ~ 12979366 (+) False c8h1orf194
XM_026928189.2 mRNA upstream 64241 12916438 ~ 12921186 (+) True lhfpl5b
XM_034307046.1 mRNA upstream 187060 12792216 ~ 12798367 (+) False dclre1b
XM_026911429.2 mRNA upstream 187060 12792450 ~ 12798367 (+) True dclre1b
XM_026926859.2 mRNA downstream 60671 13055450 ~ 13061438 (+) False LOC113534124
XM_026926775.2 mRNA downstream 60709 13055488 ~ 13061438 (+) True LOC113534124
XM_034306692.1 mRNA downstream 118927 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA downstream 118927 13113706 ~ 13134629 (+) False slc38a5b
XM_026930223.2 mRNA downstream 141910 13136689 ~ 13145207 (+) True wasb
trnad-guc_1 other upstream 603357 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1274882 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1275995 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 67157 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 69271 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 374769 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 710477 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1327393 14322172 ~ 14323450 (+) True G132595

Expression Profile