RNA id: XM_034306615.1


Basic Information

Item Value
RNA id XM_034306615.1
length 1158
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113524948
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17037821 ~ 17050280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCTGCTCGCACATCAGACGCACTTGTGTGTGGAAACTCCACAAGAACAGCATCTGTTAACAAAGTAAAAGAGGGAAAGGCCTTTAGAAAGAGGACTAACATAGATACCCCTTCTCCTTTGCCTTCTCTGCTTCCATCTCTCCATGTCCACTCTGTGGATCTGGAAGtCATTGAGATTGCATCAGGGACTGAAGTTGATGAAGAAATATTCAGTGACCTCATTGGACAAGGCAATGTGGTGTTGAGTGTTTTCTCCAATGATCatttttcagaCTCCTTCTCTTCTGAGATGTCTGACTCCAGCAGTAGCTCAAGTGCATCAACTGTCATCTTAAGTGAAGTCCCTAACAAGAGACAAAGAACTGAGGAGGCAGCATCAGCATCTGCTAAACAGttgaTTGAAGATGTGCTAAAATCCAAGTCTGGTGGTGAAGCAGTAATACAGGAGTATCAAGCAACAGAAACGCTTACAGATGCCACAAGAcgacaaatgataaatatactGGTGGCTCACATGATTGAAACACATGGGCAACTCCCCACTAAAGCAATCAGAGAGCAGTATGCTTTAGGCATAGTGATGTTGTTTCCTTCTCTGAGAGATCCGTATTCCAAGAAAGGCTATGAACACTTCTATGATCCAGCAAGCAACACAGGATATATCGCCTGGCGTATGAAAACGGTCCACCAGAAGATCCGTCGAGGATCTTTGCCACCTGATAGCCCTCTTGATGTTACACCTGGAGGACCAAAAGGCCAAAGGGCTATTAATTTTACAGGGCAACTTCATGGGGATGCTTGCAAAAAAGCCATGTCTTTACTCAATCACACCACAGACAGGTCCCAAATTTttcagaaaatgagagagaccTTTGAACATCGGCAGAAGCTTATCAAAGATCCGGGCTTTACCGTTCATATCCTCTCTACCTTCCCAAGATTTCTGGACACAAAAGGGCTGGTGGAACAAGACTTCACTCTGCTTTTTGATGATGAGACTTCCTCCAGACTGCTTCAGAAGTGGGACATGTTCTTCAAACCAAATGTAATAAAAGAGGCCAAGCGACTGGCTTCAACACCAGAGTTGACACAGTTGTTGCTGTCAGCTGAAACACCTGAAGAAAGTGATCCTGATGAAACAAGAATTCATGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158609 lncRNA upstream 17925 17019679 ~ 17019896 (+) True G134245
TU158606 lncRNA upstream 21287 17016254 ~ 17016534 (+) True G134242
TU158605 lncRNA upstream 21765 17015751 ~ 17016056 (+) True G134241
TU158602 lncRNA upstream 45854 16991767 ~ 16991967 (+) True G134238
XR_003403421.2 lncRNA upstream 62884 16951548 ~ 16974937 (+) True LOC113533561
TU158671 lncRNA downstream 160672 17210952 ~ 17211186 (+) True G134301
TU158673 lncRNA downstream 182895 17233175 ~ 17233424 (+) True G134303
TU158714 lncRNA downstream 247888 17298168 ~ 17355660 (+) True G134344
XR_004578574.1 lncRNA downstream 262619 17312899 ~ 17330663 (+) True LOC117597810
XR_004578638.1 lncRNA downstream 326023 17376303 ~ 17378236 (+) True LOC117597877
XM_026910769.2 mRNA upstream 170646 16859976 ~ 16867175 (+) False gucd1
XM_026910736.2 mRNA upstream 299837 16716133 ~ 16737984 (+) True bicdl1
XM_034306531.1 mRNA upstream 299837 16716133 ~ 16737984 (+) False bicdl1
XM_034306532.1 mRNA upstream 299837 16716133 ~ 16737984 (+) False bicdl1
XM_034306624.1 mRNA upstream 416055 16587116 ~ 16621766 (+) False mtmr3
XM_034306703.1 mRNA downstream 10778 17061058 ~ 17081950 (+) True LOC117597835
XM_034306704.1 mRNA downstream 10781 17061061 ~ 17081950 (+) False LOC117597835
XM_026925931.2 mRNA downstream 299036 17349316 ~ 17352590 (+) True seta
XM_026925238.2 mRNA downstream 360828 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA downstream 360829 17411109 ~ 17449062 (+) True crb2b
XR_003402556.2 other upstream 302486 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 437236 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 443418 16580257 ~ 16594403 (+) False mtmr3
TU158711 other downstream 245831 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 980695 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1385930 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2437207 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3172135 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile