RNA id: XM_034306704.1


Basic Information

Item Value
RNA id XM_034306704.1
length 2103
RNA type mRNA
GC content 0.41
exon number 15
gene id LOC117597835
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17061058 ~ 17081950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGAAAACGGCTGCTGTGTTGCTGGTGAAGTCTCAGGATTTTACAAGACTATACAAGAACAATGAGTGCAGAGGAGTGCTTCAGACTCAAGGAAAGTGAGGTGAGAATCGAACACTCTCTGAATAAGAATGAGGAGAAGTTTGCAATCAGAAGGATAAAGACTGTTCAACAAGCGCTGCAGAAACTTGGGATACACTGCAGTCTGGATGAAGTGCCAAACATTGCATTACTGGGTtctggaggaggagaaagagccATGGTGGGTTTGCTGGGATCCCTGGTTCAACTCGAAAAAGCAGGTTTTCTGGACCTTATCCTTTATCTGAGTGGAGTCTCTGGATCAAcctgGTGCATGGCCTCCTTATATCAGGAACCAGACTGGTCCACCAAACTGGAGGCTGTGAAAGACAAGATCATCAAGAGACTCAGCGGTCCTGCAGTCAGCTGGACAGATGCATTTGCCAAACTGAAGAAATATTACTATGAGAAAGACAACTTCAGCTTGACTGACTTCTGGGCAGCAATGGTCGTCACGACATATGTGAAAGAGATcgatgaacacacactcacagagcagTGGAGCCAGCAGAGTCAAGACCCGTTTCCCATCTACACAGTGATCGACAAGAAATGCAAACAGGAAAAGGAAGcagacCCCTGGTTAGAGTTCACTACACAAGAGGCAGGTTATTCCCTCATTGGAGCATTTTTGAGAGCCTCCAGCTTTGGCAGTCAGATTGAAAAAGGCTCTATGGTGAAGAAGCAGCCTGAAATTGACATACTGTTCCTGCAAGctctgtgtggcAGCGCTTTAGCTGATGGAGAGGAGCTTGTGAAATTCATCTGGCAAAAGATAAAAGatTTCTTTAAGCACATGTTTCCTCACATAAAAAACATACTTCAGGAAAAGGGGCAAGATCCAGACTCTCCACCTGCAGACACCTTCCAGGACGTTGTGGAAAAACTTGTGGACATGAATCTCTATGTTTTGGATGGCAAAGATCCTTCTGCTCTTGATAAATCCATCAGAACAATGCTGATCGGTCTCGCTGGAGGCAAAAGACAGCTGATTTTTCAAGTGGAAAAACTGAATCTGCATAATAAAGAAGCTGCAAAACTGTATATGAAGCGTTACACCATGGATGTATGCAACAATTTGAGTGTTTGGTTCAAACTCTGGCCATTCGATCTTTGCTGCAGCATTTTAAGATGCGCGACTCAGTGGATTTGGGGCAGGGAATATAACTTTCTCCACAACATGACAGCTAAAGCATTGCCTGACCCTCTTCTGAAAAGTGAGACGAGAGACTATATAGATGCTGGGCTGTTGCTCAACTCACCCTACTTCTCAgtgctgagaaaagagagaaacgtTGAACTCATCATTTCCCTGGATTTCAGTGATGGTGATCCTTTCATGACAGTGAAGAAAGCTGCTGAGATGTCCAAGGAACAAAACATCCCTTTCCCTGAAGTCATCATACCCCCTGAGGACCCACCGAAGGACTTCTATGTGTTCGAAGGCCAAAAAGTTCCAACTGTGATACACATCCCTCTCTTTAATGTGGTCAACTGTGGAGATAAAACTGAGGAGTGGAGGAAGAAATATCACACTCTTCAAGGTCCTTACAGTGCTGAGATGATCACTGATCTTATGGACGTAGCtggaaaaaacatcacaaacaacaaagaaaatttGAAGAAAGTGATTTGTGCGATcgttgagcaaaaaaaaatgggttaATACACAACAAATGACAGTAATGTATCTAAATACAGACTAAACTGATCTGCATATAGTTGATTGAACAATAAATGGTGTTTCgtttctttttctatcttttaTAATCACTTAACATTGATCAGCATTATTACCTTTTCTgcaaaatgtgatttttgtgcCATAATAAGAGCATCAGAGATTGATAAAGTTTGcgcttcatttctttttaatgttgaaaatgtttctGCATGTTTCAATCTGTTTCTTCATGACTGACCTTCATTAAGCAATAAATATCTGATTATTAATTATCAAATCAGCAATAACAGACTGGATTGCATATATAACAACAGTAATTGcagattaaaatatatata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158609 lncRNA upstream 41165 17019679 ~ 17019896 (+) True G134245
TU158606 lncRNA upstream 44527 17016254 ~ 17016534 (+) True G134242
TU158605 lncRNA upstream 45005 17015751 ~ 17016056 (+) True G134241
TU158602 lncRNA upstream 69094 16991767 ~ 16991967 (+) True G134238
TU158594 lncRNA upstream 96004 16964834 ~ 16965057 (+) True G134230
TU158671 lncRNA downstream 129002 17210952 ~ 17211186 (+) True G134301
TU158673 lncRNA downstream 151225 17233175 ~ 17233424 (+) True G134303
TU158714 lncRNA downstream 216218 17298168 ~ 17355660 (+) True G134344
XR_004578574.1 lncRNA downstream 230949 17312899 ~ 17330663 (+) True LOC117597810
XR_004578638.1 lncRNA downstream 294353 17376303 ~ 17378236 (+) True LOC117597877
XM_034306615.1 mRNA upstream 10781 17037821 ~ 17050280 (+) True LOC113524948
XM_026910769.2 mRNA upstream 193886 16859976 ~ 16867175 (+) False gucd1
XM_026910736.2 mRNA upstream 323077 16716133 ~ 16737984 (+) True bicdl1
XM_026925931.2 mRNA downstream 267366 17349316 ~ 17352590 (+) True seta
XM_026925238.2 mRNA downstream 329158 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA downstream 329159 17411109 ~ 17449062 (+) True crb2b
XM_026925239.2 mRNA downstream 529436 17611386 ~ 17621646 (+) True lhx2b
XM_026925790.2 mRNA downstream 823854 17905804 ~ 17916639 (+) True enkd1
XR_003402556.2 other upstream 325726 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 460476 16580453 ~ 16600585 (+) False mtmr3
TU158258 other upstream 466658 16580257 ~ 16594403 (+) False mtmr3
TU158711 other downstream 214161 17296111 ~ 17296883 (+) True G134341
XR_003403426.2 other downstream 949025 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 1354260 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 2405537 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 3140465 20222415 ~ 20442191 (+) True LOC113533440

Expression Profile