RNA id: XR_004578530.1


Basic Information

Item Value
RNA id XR_004578530.1
length 215
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC117597782
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12809123 ~ 12809738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGAAGCAACCACTCCCAAAGGATAGACATGTTTCATCATAATATAAAGTTTCCAGATGGACAATTCATCCTGGCAGTACTTCTCTCTTGCATACCAGGCTAAAGCTTTATAAAATGGTTTATAAGAGTATATCAGCCACACTGTGAACAATAAAGAGTGATTTGAATGAGCTTCTCAGAACAGAACATCTGCAGAGAGACTCTGGACACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155457 lncRNA upstream 79601 12712625 ~ 12729522 (+) True G131605
TU155458 lncRNA upstream 96638 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA upstream 107622 12700712 ~ 12701501 (+) True LOC117597872
TU155155 lncRNA upstream 204489 12603517 ~ 12604634 (+) False rbm15
XR_004578623.1 lncRNA upstream 275865 12519894 ~ 12533258 (+) True LOC117597859
TU155563 lncRNA downstream 127566 12937304 ~ 12940631 (+) True LOC117597771
XR_004578521.1 lncRNA downstream 128925 12938663 ~ 12941456 (+) False LOC117597771
TU155603 lncRNA downstream 193657 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 193657 13003395 ~ 13006090 (+) True G131721
TU155606 lncRNA downstream 193657 13003395 ~ 13006090 (+) False G131721
XM_034307046.1 mRNA upstream 10756 12792216 ~ 12798367 (+) False dclre1b
XM_026911429.2 mRNA upstream 10756 12792450 ~ 12798367 (+) True dclre1b
XM_034307047.1 mRNA upstream 10756 12792450 ~ 12798367 (+) False dclre1b
XM_026909634.2 mRNA upstream 25966 12775926 ~ 12783157 (+) True adora1b
XM_026922582.2 mRNA upstream 146978 12659028 ~ 12662145 (+) True LOC113531715
XM_026928189.2 mRNA downstream 106700 12916438 ~ 12921186 (+) True lhfpl5b
XM_026947120.2 mRNA downstream 168289 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA downstream 168293 12978031 ~ 12979366 (+) False c8h1orf194
XM_026939856.2 mRNA downstream 175689 12985427 ~ 12994779 (+) True inavaa
XM_026926859.2 mRNA downstream 245712 13055450 ~ 13061438 (+) False LOC113534124
trnad-guc_1 other upstream 427053 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1098578 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1099691 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 252198 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 254312 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 559810 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 895518 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1512434 14322172 ~ 14323450 (+) True G132595

Expression Profile