RNA id: TU26474


Basic Information

Item Value
RNA id TU26474
length 5167
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G22199
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5730446 ~ 5735696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTActacttcatttattactatattgTCTTTCATTCTTGCATTGCTGTGATATATCCGTTTGAGCAACCTCTggcacaagaatttccctcggGATGAATAAAGTTCTATCTTATCTTATAACTGACAGAGAGAACATtcaaagagagaaggaaggagcaAATTCCCACACTAGGACAAGTGCTAAATCTACTATAGTTAGCCACTGTTACAAAGCTGTTATGAAATGCCACTTACTTGAAGATCTGGAGCAGGGCATCAGTAGGGGCATTGCAGAGGCCGGACACCATGCTCTGCAGGCGACTCACACTTTGAGTAGCTGAAGAGACTGGTGTGATCAGTACCTCCTTCTCCTTCAGGTACCTACGCCCTGTAAGTGGAGTTGAAGGGGCCAGCGAACGCATCTGTGCAGAGGAATAAACATAGCAATCAACATAGCTTGCATACAGTTCAGCTTTTGGCTTGACAATTCCCAAAATCCACATTTTGTAGAAACAATGCAAAAACACTGCACTAGATGTTCATTAATCAACACAATACTATGCATTAAAATTTGAGAAGTTATTAAATTGCTCTGAAAGTAATTCCCATAACAAAAGTATTGGACTGGATTATTGGATACAAAAGAAAGGTTTTCAGtctataacaaaaataaataaaatcaagtcaaaaatgtattgaaaaaagtgatttttgtaGATCTCATTGTAGATCTATTTCTTGTATTTCCACCTCTGATAAACTGAAGAGTTCAGCTGAGTTATGTGACACTAGGCTTGTGCGACAGACtatgtggacattagacaaccaATTTGCGAAAGGATTTtattgaaatgcatttttttttaaaccgtttACTGTGCATTACTTCAGAATCACTTAGTTCACCACCCAGCTGAGTTTTCATGACTGTCACAGTTCCGGACTacacagctgataatattattacatcCTCACCTACTCTCCTTAAAGCTGAAATCATTTTtcctgggttttttttaggCTAGTggttctggatgattaaatcGTTTATCatcttttaaaaacagaaaatcgCAAGCAGGgaaaatcaatatcacacaagcctatgTGACGCATATCTGATTCTTTTCAGTGGGCAAATAGTTTTAGGGTAATGGTTTGATTAGTCAAATCAATAGTGATTTAGGTATGTTTCATACCTTCTCAAAGTGCTGCTGAAGGTTGTTCTCCACCTGCATTCGGGCTGATAACTGACTGGATGGCGGCTTAGGGGTAATTTTGTGTGGTGTGCCAATCTCCTCATTCGCATCAGCACCCAAAAACACTCGCTCATCAAAGTCACCCACCGTCAGGACATATTCTTCATATTCACGATTTATGGCTTTGCTAGACAGTCACACATGAATACATGTTCATCTTATtcattatgtttaaatatataaataaacgtCAGAGATAACCTttacaataacaatatttaataCAGTAATTAGGAAAGATTTAAGCAATTAGTATATTATTAACTAATAATGGTAATGACACTGTAGtaaaattatgtatttttaagcATTACTTAATATGACTTTACAGTTGTGTGAATCCACAAGTATCATCCAAGCGAGACACAGTTAAAGGGTGCTTTATTGGGGAAAGAGAGTACCACATATGTACTACAACATAATTATGTTATACCCTAATATGACACGTGTAAATGGTGAATATGAAGCACAGTAGGATTGGGCCTAACTGAATTACTCCCATGCGACGACagataatgatttataatgatgGTACATACTTATGAGGATAAATTTAGAAACTGGAAGTAGGGTGGGCATTTCTCTATTGTTACCAACTGGATGCAACATGTTTTCAACTATTTTGTAAAGTTCGCAAGGAGAAGTTATAAGAAACttaaacatattagaacaagtgaattaatataaatctgtgattagCTCCCTGTCACAAAGTCagtcacagagagagacattacaCTGAGTAATGTATTACAGTCACAGTGACGTATTACGTGGCATCTTCAAGAAAAAACCACAGCCATATAGCCATCTTTCCCTTCCTACTTCTCTGCTGTGAGTGTCTCTGACTAACATTACACAATGTGGAGCTATCCACTTAGCAGCTTGTGACCAGTGCCAGAGCTACAGCTGACCTGTGCTTTAAAGTAGGACACTCCTCTCATTCTTTTCTACCTAGGAGAGTGTTCCTTCATCTATGTTAAGAGCATCTATGTTTTTCTGGGACTGCTATGGGACCATAGTGTCCGTTAGTCTCGAGTCAGTTTACCCTCCATTTAACTAGTCATTTGCTGCTCTGTTTGCAACATTTATCACTCTGAGTCTTCCCTTTGTGTTGTATAGTTATTCTCACCATTTATTGATTGAAATTTGCACCTCATTTCTTCAGTGCCGAGGTGATCTCTCCCTGTGAATTTCTCTTTTAATATTCCACATTCCCCATCCACTAGCAGGAATTGAATTTGGCAGCCTCAAATACCACCTGCTGCCTTCTTTTATTTCTCCCATTTGagcttgcaaaaaaataaattatattgcaACAGCCTGTAGTACCTActactcaacattttcacactatctaGAATTCACAGTAGCATAGCAACCTGCCACGTTCTGCATGCGCCACTGTACAGCGTGCATGGGCTCACTTCTCTGGTTAAAATAAGcacctgttgtttttttttttggttttttttttttttttttttttcccatcccGATCTAAAAACATTCCAAATCTTGAACTGtatcacaaaaagaaaaatttgtGGAGTGCAAAGACAAGAGTCATGGGAGACTAATGACATGTATGTTCTTAGCAGAGATAAgcctgtagaaaaaaaataaactttttccAAAAGTAGTCTTACATAATGTGCAGCTCACTGTACAGTTGTCTTCATCTAGACTGAACTATTACATTTAAACTGTCGTTTCTTTTTACCAGCTGCCTGCATTTTTTACCGTCTGCCTCACTGTTTTCTCCACTGACCTGATCTCTACAACGACTACGGACTAGCAGTTTATGTAGTAGAATAATCAATTAAGTCTATGTAATccctaatatatattttaaaaaagtacagtaaATGTTATCATGTAATAGAATCTATTTGAATGTTTGCTGTATTAGCCATTCTTTTTTCTAGACATGTCCTATTCTTCTTTCAGGGCCTAGGTTATTGGTGTTAGTCAACAGGATAGGTAATATGTTTATCATTGGTCAGCCGGACCCCACGCACTGCCCAACTCCCAGGATCCTGGGCTTTCTAGAGAAAATACTAAGCAGTGGCAAGTCACCATCTACATTGAAGGGGTACATGGCAGCGATGCTGCAACCACAGCACTGGGGATGGCATCTCAGTAGGATCTCAGGCTTACTACTGCCTTGCTAAAAGCTGCAATTGTTGCCAACATCAATATTCATATTGATAATCCACAAAGCCTTTGAGAATAGTGTTAGTGTCCATCTTAGACTCAGAAGGGGTCATTCAAAATATTATAGGACCCACTCATTTTGGTGAACACATCCTTAATTTAATACCTAGTTCATGTTCCGTTCACACTGTAACGATATGGCTGCACCGGTAGCTCCACTTAAGTCatctatttttgtgttttattgtgcataattttcttatttttgaatTAGTCAGTACAACTTGGGCATTATTCAGTATGACAGTCAAATCCTTCTGGATTTATGTCCATCATTGAACAGGGACTTTAATTCTGTGACAGCTGGTAGCATCAAAGGCTGGGTTATCTACACGTCACTCGTGCTTTGTTTACAAATAAGCCAGAAAAAAGAACCAGGAGAGGGAAGCATGCCGGCATCCTTTGCCAAACTACAAAtttcagctacaatttatttgtatagcccttttaacaatggacattgtcacaaagcagctttacagaaatatattttataattatatgtatttttaatttataaatttatccctactgagcaagccagaggcgacaatggcaaggaaaaactccctgagacgacatgaggaagaaaccttgagaggaaccagactcaaaagggaccccATCCTCATCGGGGTGACACCAGATatgagtgtgattataaattacagtgcaattataaataaatcccttctataactgtgtactatatagtcgaaaagtgcaattgtgtaattGCAAGGtacttatgagcaacttatgaatacAAGCATCAGAGCCACATCATTAAGTGCACAGATGAGATCAGTCCAGAAACTTGTGCATTTCCCAACCAAAAGCCTTGGGTCAATGAGGAGGCTGGAACCAAACTGAGACAATGCGTTGCTACCTACAACTCTGGTTATCCAATGTCCCACAAGAAGTCCAGATATGACCTCCAGAAGGCCATCAGGAATGCCAAGAGGAACTATACAGACAGCGTGGAATCTCACTACCAAAACTTGGTCCTCTGGCGCATGTGGAGTGGCCTGTGTGCCATTAAATATTACAACGGTACCAATAACAGCCACTAAAATTAGACAGAACATTAAGAGTATAAATTTAAACAATCTGATAACGGGAAGATCTCAAGTATTCAGGTGTTTCACATCGCCCCTGGTGGTCATGTGGGTTCCATCGAACCACTTACACATGTAACTAGtcataatgttacattttataaGTTATTTGATAATTAATACATTCACTTAACAAGAacataatgtgtaaataagcaTTACAGAAAAAGTAATTGCTAAGCAAGTCTTAGTGCTCTAATTGTTAATACATACTTAAAAAGTGCTTAATATGAAAATGTTAGTTGTCATTACCATCATTTGTTACTGATTATTGACTAATTTATTGTTTAGTAATGCTTAAATTATGTGTATATGAAGTAATACTTATTAATGCACCcatattgtaaagtgttacttttaataaagggaaaaaaactctTACTTATTGTCTTGGAAGTTTGGAGTGTCCAGCAACTCAGTAAGCGTGTCCTTGTCGCCTTTAAGAATCTTTTTTCTCAAACAGACTTCTGATGTAAGGTTTAAAGTAGTGCTCTTTTATCCCTTTAGCCTCAACAACTAGACCATCGTGCAGTTCGCACAAATGCTCAAGCACGCACTGAGCCTCTTCTGAGCCCCCACAATCTGTTGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26494 lncRNA downstream 14396 5715840 ~ 5716050 (-) True G22219
TU26489 lncRNA downstream 19208 5711010 ~ 5711238 (-) True G22214
TU26476 lncRNA downstream 27692 5701617 ~ 5702754 (-) True G22201
TU26478 lncRNA downstream 39329 5690687 ~ 5691117 (-) True G22203
TU26456 lncRNA downstream 49964 5680121 ~ 5680482 (-) True G22182
TU26507 lncRNA upstream 59246 5794942 ~ 5795147 (-) True G22229
TU26509 lncRNA upstream 128169 5863865 ~ 5864101 (-) True G22231
TU26515 lncRNA upstream 134804 5870500 ~ 5870701 (-) True G22237
XR_004577038.1 lncRNA upstream 153586 5889282 ~ 5890832 (-) True LOC117595835
TU26607 lncRNA upstream 220943 5956639 ~ 5965183 (-) True blcap
XM_026918763.2 mRNA downstream 50487 5659803 ~ 5679959 (-) True pigu
XM_026917461.2 mRNA downstream 79161 5638596 ~ 5651285 (-) False osgn1
XM_026917446.2 mRNA downstream 79681 5638596 ~ 5650765 (-) True osgn1
XM_026917453.2 mRNA downstream 82677 5638596 ~ 5647769 (-) False osgn1
XM_026924219.2 mRNA downstream 99191 5594109 ~ 5631255 (-) False mtss1
XM_026919444.2 mRNA upstream 26041 5761737 ~ 5863433 (-) False chd6
XM_026919428.2 mRNA upstream 26041 5761737 ~ 5863433 (-) True chd6
XM_026919418.2 mRNA upstream 26041 5761737 ~ 5863433 (-) False chd6
XM_034298801.1 mRNA upstream 26041 5761737 ~ 5863433 (-) False chd6
XM_026919453.2 mRNA upstream 26041 5761737 ~ 5863034 (-) False chd6
TU26421 other downstream 194386 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 194439 5534124 ~ 5536007 (-) False romo1
XR_003403149.2 other downstream 529234 5111462 ~ 5201212 (-) False LOC113530384
XR_004577391.1 other upstream 338339 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 743706 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2526923 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2745355 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2745355 8481051 ~ 8484181 (-) False tcta

Expression Profile