RNA id: TU31994


Basic Information

Item Value
RNA id TU31994
length 3050
RNA type TUCP
GC content 0.44
exon number 2
gene id G27107
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14050401 ~ 14058445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCTTAACCACAAACAACAATTCCCCTTTGTTTAATTTGCCTCTCAACCTCCCCACCCTTAAAATCATACAggttttatttacatacattcaTAGGATGTGGCTAAAAACACCTGTGTGTTAACAAGTATTCATAAAATTCATTCTATGAATGAAAGGAATGCCATTATATATGTACAGTGGGCCCCTTGATCAGAAAGAGAACACACATGAAACAGATAAGGAAGTAAGTCTCCCCACTTCCAGAAGTGCccagaaaatattaataaacactaaataaaacatggcaccaACACTACTGTGGTTTTGCCTACTTCAGCCACAAGCACCTTGGTATGTCCACACTACTTACCCAACTTTCCTAACAAACATGAACAAACGCAAACATGCTGGTGTGTAATCGTTGTAAAGTTACAGTATGTAATCCTCAAACTGTAACATAACCATTTTATCTTGACCACTTTGGGTTCACTGAAAGTAACAGCTACAGTGTTTCATGTTCATGCTCCTGTTTGTGTGAAGGTGCGGGGGAGTGGGGTAGACAGATGTAACACCAGCATTAGTATCACAATGATCTGTAGGTAATCCAGTAACACACTGGAGTTTGGAGGCATATTCTGTGtcacaggaaataaaataataaaacagaaagagaagacACTTGGGTCCAAATGCTCCATGTGCTTACAAATATCAAGTGAATCTCATTTAGTGTCACTGCTGCTAAGTGCTAACTACGAGTATAAATGATTAACACTCTTAGTTATTACTCTAAGTTGTTTGATTGGGTCACATTCCTTCATGAACTTCATGAGTTGTTCTGAAATGCTGAGACTGGGTTTACAGCGTCCCCAGCACCCAAGTCAGACCTGAGATAAGAGCTTTGTGGTTGACTAAGGCCAAAAACACAGCAGAGCCATTAAGAGGcgacattaataaaaatacaaacaccTTATTACAAAACAGCTTGCCTTAAAAGCAAAAATGAGATTTTCAACACTGATTGAAGGTGTACATATTAAACATGTACAATCGACATTGTCCTCGTTTTTTGCATTTCTATTGTCGTTCTGCACTCACATAAGAATGATGTGGTTTATGAAAGTGTCCCCATAGCTTATTCAAATCGACTGATCCCCATTAGCACAGTCTGTATTAATGCCAGTCTGCTCTTCTTTGTAATCCATACAGAATGTAGCACCAAAGATAACAATACATTTTGCCTTTGCTCTGCCActgagatttaatttaaaacactataaatatgAGGGCAAAGTAGAAATGCTCAGACATGATACTTCTTACGGTTCCAACAGTTTCCTCTCACCTATTCACACACACCAAATTCGTTGTGATTTTGTGGTTCAGTGAGTGCAATGGGGGTGGGATCAGGCAGCAGTGCGGACTGTCCGGCTGTTCCTGGGAAAGCGGTGGACTTTGATGTGCTTTGATAGGTGATCACTGCGGGCAAACTTCTTCTCACACACGGGACACTGGTACGGCTTCACCCCAGAATGGGACCGCCGGTGACGGGACAGCTCATCCGAGCGGGAtccaTACACAGCCAGGCCAGTTACAGGCAAATGGCTTCTCTCCAGTATGTCTCCTCAGGTGAGCTTTAAGATGGCTACTCTTGGTGTACATCTTGGCACAGCCTGGAAAGTTGCACTTGTGCATTTTGATGAGATCTGCCACTGGATTCTTCTGGAACTTCTGTGCTCCTCCGACTAGGAGACCAGCTTGGAACCCACCCACACCAAGACCATCCCCTCCACTACCCACAGGTTTTGCTGCGATGGGCACAGGTGCTATCCGCACAAATTTAGATGTGCCACTGAGCCTGGTAGATGGTGAAGATGAATTGGGGGTAGAAGGTAGAAACTGAGGGACTAATGCAAAGGTCTGTCCCTGGATGTTAACCAGCAGTTGGGCAATTTTGATGTCTGTGCCTGGGGCGGGGGGCTGAGTTGTTAAGGGAGGAGTTGCAGCCCCACTGGGGCCCTGATTCTCCTGTTTGATCTGAATTGGTTGGATTTGAAGAATAACAGGCATCCCACTATTATCATTGCTGGCATTTGGGGTAGTGTTGTTCTCAGTGGAGACAGGTCTACTTTGGGTCTCCTTCTTTATTGCATCCTCTGCCTGCATGCTTGGATCTTGATTACTTGGAATACTATCTGTGCTTGTGGTCTCATGATCAACTCTGAAGTTTGATGGAAGCTTAGCCATTGACACCGTTTGATTAGAATGATGCTGAGATCCAATGGTGCTTGTCTCTGGCACCCTAGATGAGATCTCTTCCATGACCACCACTCCTGTCCCCAATCCGAGGTCCAGCTCCAACTCCAATCCAAGGTGTGAGTTCCCCTCATGCTTGAGGGACACCAAACCACTCATGTTTTCTTCTAAGAACTCTTCAATTTCCTCCAGGGTGGGTTGGAAAGGTTCAGCAGGTGCCTCCTCCATGTTTGAGGGGGACCAGATTGGTAAGTCAAAGTTCTCTTCCTTCATGCTGTCTCTTTGTGAGTTCCAGGGGATGCCTGCTAGAGGAGTTGAGGTTACAGTGCTATCCTCGGCATGGTTGCCACCTCCACCACCAAGGGAAGTATGGGATAGCAGGAAGTTGAGGATGCCATCCTGGCTCTCAGTACTTGATGTACTTCCGTAGCTTGAGCTTAGGACTTGGGAATCTGGGGAGGAGCAGGAACGCAGACTCGATGCATCACTGAGGTCGTCTTCTGAGAATGGTGACGGCATCACCTTATAGCTCCCCGAGTCTGATACCATATCTGACAGGTGGTACCCCACAGGTGAGGCAGAGTCTATGCCACTGTAAGAAAGGAAGTTCTCTTCAGCTGACAAGAAATGATCCACCATTCCCTAGATTTTcccttttattaaaatttataaacaaCTCCTGTTTCGGTGAACAGTCAATTCCTCTTCCTCAGGCTACACCGAATTGATGAAGTCCATGTAAAATGAGAATGTTGTTTTTGCTCACAGCAAGAAAGACATACTGTGATTCACACATACACCAAAAGCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31990 lncRNA downstream 21517 14027302 ~ 14028884 (-) True G27105
TU31924 lncRNA downstream 213919 13835830 ~ 13836482 (-) True G27043
TU31923 lncRNA downstream 214052 13835830 ~ 13836349 (-) False G27043
TU31888 lncRNA downstream 259035 13788793 ~ 13791366 (-) True G27016
TU31830 lncRNA downstream 355581 13655472 ~ 13694820 (-) True G26970
XR_004580178.1 lncRNA upstream 5511 14063956 ~ 14099689 (-) True LOC117599875
TU32060 lncRNA upstream 98493 14156938 ~ 14158099 (-) True G27168
TU32061 lncRNA upstream 114227 14172672 ~ 14172921 (-) True G27169
XR_004577242.1 lncRNA upstream 180350 14238795 ~ 14251264 (-) True LOC117596067
TU32152 lncRNA upstream 296396 14354841 ~ 14401429 (-) True G27254
XM_034314008.1 mRNA downstream 6076 14030764 ~ 14044325 (-) True cfap100
XM_034311817.1 mRNA downstream 143212 13864944 ~ 13907189 (-) False lhfpl4a
XM_026912752.2 mRNA downstream 143212 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912744.2 mRNA downstream 143212 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912736.2 mRNA downstream 143212 13873714 ~ 13907189 (-) True lhfpl4a
XM_034309688.1 mRNA upstream 71396 14129841 ~ 14147849 (-) False LOC113531636
XM_026922484.2 mRNA upstream 71396 14129841 ~ 14147847 (-) True LOC113531636
XM_026918449.2 mRNA upstream 99939 14158384 ~ 14172056 (-) True txnrd3
XM_026909744.2 mRNA upstream 219604 14278049 ~ 14457232 (-) False plxna1b
XM_034311693.1 mRNA upstream 219604 14278049 ~ 14456646 (-) True plxna1b
XR_004579719.1 other downstream 143212 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 415749 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 550417 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 811595 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3560106 10489293 ~ 10490295 (-) True G24760
trnae-cuc_5 other upstream 333835 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 814503 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 814504 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 1238864 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 1398190 15456635 ~ 15461001 (-) True G27925

Expression Profile