RNA id: TU32060


Basic Information

Item Value
RNA id TU32060
length 1162
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G27168
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14156938 ~ 14158099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgtttCTGCTTCTGACAGTTTCTTATAAGGGAGCGCAATTCTTCCTCTCTTGACTAAACCTGAACCTACTTGGGCCTGATTCACATTCTTTGTgattgattataaatatttgaatacaACTCCTGCAAAAATTCTGGAAttaccacacttagaggatgttcactcAGCTTTTTTACTTCGTGGCAAATAAAGTCAGATTTTatacaaaacaattttttatttaatagctGAACATTCTGGCTTCATGAAACATATCTCAAAcaaattcaattattttaattaatcacatattttttccagatcaagtagtggaaaaaaaattacagaatcAGTcagtgttgaggaaaaaaattatagaatcaacaacaacaaaaaacacaattagtactttgttgctcctcctcgGGCTTTGAGGCAGAGacttcactaatgaaaaacaatattctcCATCAagctggttccaactttctcaaATAGcggttgacagatcagctttgcaggatGGAGCTTTGTCATggacatgaattttttttaatttccaccaTAAACtttcaatcggattgagatctggactgtttgctggccatgtcattaagttgatatgcctttcctggaGAAAAGCTTTAACACtctttgctctgtggcaagatgcatgatcatcctgaaaaatgacttcatcatcaccaaacccATGTCTATCGATGGAATGAAAAAAGTGACCAAAATTCCAATGTACACTTGTAtccctggtcctttacctgacatgtaACCCCATATCATAAATAAGTGGGCAAGTTTGATTGttttcttcaggcagtcatATTTATACGTTTCATTAGAACAGCACCAGACAAAGGTTCCAGCATCATCACTGACtatcactttcatccaatcatccacactccatgattgcttctctttagcccactgtaaccttgttttcttctgtttaaggtgttagtgctggtttggCTTTTCTATTTGTAAATCCCATTTCATTCAGCCGATTTCTtacaaacattgactcctgtttccgaccaattgtttttcatttgttttgttgtgccttttctattttcaaggcatattTCTAGTTTTCAAGGTGATTCCATTAATGCCATTAATTatgccattaattaaaataatttaatttgtttgagG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580178.1 lncRNA downstream 57249 14063956 ~ 14099689 (-) True LOC117599875
TU31990 lncRNA downstream 128054 14027302 ~ 14028884 (-) True G27105
TU31924 lncRNA downstream 320456 13835830 ~ 13836482 (-) True G27043
TU31923 lncRNA downstream 320589 13835830 ~ 13836349 (-) False G27043
TU31888 lncRNA downstream 365572 13788793 ~ 13791366 (-) True G27016
TU32061 lncRNA upstream 14573 14172672 ~ 14172921 (-) True G27169
XR_004577242.1 lncRNA upstream 80696 14238795 ~ 14251264 (-) True LOC117596067
TU32152 lncRNA upstream 196742 14354841 ~ 14401429 (-) True G27254
TU32157 lncRNA upstream 286527 14444626 ~ 14454291 (-) True G27259
TU32201 lncRNA upstream 334538 14492637 ~ 14492839 (-) True G27303
XM_034309688.1 mRNA downstream 9089 14129841 ~ 14147849 (-) False LOC113531636
XM_026922484.2 mRNA downstream 9091 14129841 ~ 14147847 (-) True LOC113531636
XM_034314008.1 mRNA downstream 112613 14030764 ~ 14044325 (-) True cfap100
XM_034311817.1 mRNA downstream 249749 13864944 ~ 13907189 (-) False lhfpl4a
XM_026918449.2 mRNA upstream 285 14158384 ~ 14172056 (-) True txnrd3
XM_026909744.2 mRNA upstream 119950 14278049 ~ 14457232 (-) False plxna1b
XM_034311693.1 mRNA upstream 119950 14278049 ~ 14456646 (-) True plxna1b
XM_034311697.1 mRNA upstream 119950 14278049 ~ 14443085 (-) False plxna1b
XM_026922331.2 mRNA upstream 338121 14496220 ~ 14541322 (-) False chchd6b
TU31994 other downstream 98493 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 249749 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 522286 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 656954 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 918132 13238704 ~ 13238806 (-) True LOC113537313
trnae-cuc_5 other upstream 234181 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 714849 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 714850 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 1139210 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 1298536 15456635 ~ 15461001 (-) True G27925

Expression Profile