RNA id: TU32157


Basic Information

Item Value
RNA id TU32157
length 3081
lncRNA type intronic
GC content 0.38
exon number 3
gene id G27259
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14444626 ~ 14454291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAAGTAAAAACTCCAGTCCTATGTTTTGGTTGCCGCAAAACCTAATTGacaaggctttaaaaaaaaaaaatcaacgtaagttttttgttgtatttaatcATTCTAAACCAACAGAAAAATAGTTTTCTCACTTCACTGTAGTCACCTTCGAAACAAGCTGTGAAATATATTCTGAGAAGTGTATATCTACCACTGCACTTTTACAAACAAATGGAAAGTTATATGATGCAGAATCATTTGATTTAATGCACAAGGGGAAATGAATTGATTTTAGCTCAATGTTGAATaagctactttaaaaaaatgtccttaGCTTAGCTACAAGTAAGTACGAAAATACAGAGAGCTAGAAAATCTCTATAAAAGGCAAATGGAGCTTCCCCGGATATGGTGGTGGTGATTCAGCTGACCTGCACCTGGTTAACCTGGTTAGGATAGGATGattataatttgcatttatgtCACAGAGTCCAAAAAAATACTAATTGCTAGTCCAGAATTTCTGCTTTTTCCAGTCCATTCTCTGAGAAAGTTGACTCATTGTCTGGTCGAAAGTTGACTCATTAGTCAGCCATGCTTCCAAACAACCATCCACCAAGAAATTATACAACTTGCCAACTAAAAATATGCATtgtgtatattaataaaaataaatattgtacaaTGCTGTGATGCAGATACtctgatgatttaaaaatatagcaGTGTTTCCACCTGATTACTGGGAAATGTACTTGATGTAGTTACTTTGCTATTTGTAGACATAATGCTGCCTTCATGTGCTGTTGGAATTATTCTACTTCCCACTTCCACTCATaggctgtttctttttttcttttacttttattttgacaccataacacacattactcagttagctagcttgctgacGATAAGGGAATTTTGGTCAAATGCAAGCTATTTTCacagtgtaaaaatgtacaacgTGCACAGAATTGTAGCTGATgtacataaatgaatatgacCAAAATGGTAAGCGTTAACAATTAGCTGCAttgagaaaaatgaacaaaacctaTCATTCAGTACAGAAACTGTACCCTCCTCCTCCCCATCTCGGAAACTCGGTATCAAAATGACCTCCGAGTTTCccagtcgtaattacgacttgaGGGGTCATTCCTGTGGAACTTCCTAGTGGGAAACACGTATTTACGATAATTCGAtagcacgtgaaggcagcataaTTCTTAAATTGTATTGACCAGTTAGCTAGCTGTAGCAGAGCTCGCCAACACTGCAGTTATAATTAGTTAATTGAAGAAGCCAAAAATCATGGTCGTGATCAGAATATGAGTAATTGTGCAGCCCTAGATCTGAGGTTCTGCTGGAGGGCTGGGTAATTAGGTAGTAAGCTAAGAAGGGAAAGGATGAATTTGTTCATCACGTAGTTATAATGGCATTCTGTGATACGCAAATCTGAAAGGTATATTCTTGTTAGCGTCATAACATGAAATTAGCTACAAGATGATTAATAGAATGGGGAAGCTTACTTTTGAATAGCTAACATACCAGGTGAATTCCGAGAAAATAGTATTTCTGTAGTGTTTTTATAAACTACTGCCACCAAATCcacttaaaacatttaaaattctaGCAgttttttttttttttgagctgtgCACGTGTGTGCAATCACTGTCAATATCACCCTGAATGTTGATGCATGCACAGTCTCTAAGTGGCACTGGAATGAGTATATGAGCTCCAGATGCCTTTGTCTCgtcatttatttagtttgtttacCTTGTGTTTGCAGACTAGCATCTTTTCTGCAGTGTGCTTCAAGCTTGCCTCTTCAAAAGCCTTTAAATATtggctagtgtgtgtgtaggaggatAAAGAGTGTATGTGCATGAATGTAGGAGAAGATATATCAGGATAATAATCCAATTTAATCTAGCTGGGAAAatatatgtttacattttttaaatatcgtCCCTAAAGTCAATCTGGTACTCGAATCAAATTCTAGCTACTTACTGTGGACATAATCCGATGTAATCTCAATGCCGTTTGTGTCAGTGACCAGTTTAATCTAAAATTCCTGCCTTTAATGTTATCTAGGTCCAATCTCTAGCTTGTCTTAGGAACAGATTCAttgaggatgagagagagagagagagagagaggagagaggtgTTGGAGGTGCAGAGTCGCTGCCGGCTTTAGAAAGGAGAATCCGAGCGAACGCAAATCCCACTGGAATGCAGTAGCGCCCACGCCAGCGTGGCCGTGCCCCGTGCCCCATCTGCTACGCCTTTGACCCCTCCAAAACCTCAACCTCATCCATCTCTCAGTCTTTCAGCCTGTCTTTCTGGCTGTCTCCTTGTTCTCAGCTCTTTTGTGTCAGTAACTGGCCTGAAGAGTCATTGATGGTGGGGTTTGCCCTCATTGTAAATGACTGGTGAAATGCAGAAGCCATTTTAGTGTAGATTAGCCTTTGGTATGCGTTAAAGAGTCCCCATTATCCAAAGCTAGGAGCTAAAAGCTAATTGCTGTGTCCATGTTTCGCTACGAGGCATAACTTATTTAGCCATGCTAAGTGCTTCTATCTTGTCCTAATCAGCCTTAATCATCAGGATTCCTAATGGTAATTTGCTGGATATAGTATATGATGATTTTTTGGTTCTAATTTGTTCCATTAGGCTTATTTGATGGTTTTGGGCATAATGATCTAGGAAGAGGAATAGTCATCCAcatgtgtgtttctgctgtGTAACTACAGAATGTGGGTATTTAATCAGGAATTTATTCCCCAGTACCTTTTGTGTTTCTAACCCAACTGACGTGTAGCCTATATACAAAAACACTAGTTACATAAAATAGCAGATAAGCAGATAACATGAATGGTGACGAGTTGAGAATCCTTAGTGGCGCTCCACATTGACTAGCACCAGACACTCAGAAGCGAATGAGACGAGTGCTTTTATTTGCTTTGATGCTTCTTTTTCCATTCGCCTTTAAATATGTTTTCGTCGTCGACTTTTTAAGACGAGCCAGTTCGCCAGTTTGCTAAATAGATCAGAGGGTCAGTTTTTTTACATTCCTATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32152 lncRNA downstream 43197 14354841 ~ 14401429 (-) True G27254
XR_004577242.1 lncRNA downstream 193362 14238795 ~ 14251264 (-) True LOC117596067
TU32061 lncRNA downstream 271705 14172672 ~ 14172921 (-) True G27169
TU32060 lncRNA downstream 286527 14156938 ~ 14158099 (-) True G27168
XR_004580178.1 lncRNA downstream 344937 14063956 ~ 14099689 (-) True LOC117599875
TU32201 lncRNA upstream 38346 14492637 ~ 14492839 (-) True G27303
TU32377 lncRNA upstream 336140 14790431 ~ 14790641 (-) True G27448
TU32421 lncRNA upstream 405714 14860005 ~ 14860246 (-) True G27484
TU32441 lncRNA upstream 429964 14884255 ~ 14884487 (-) True G27502
TU32551 lncRNA upstream 556034 15010325 ~ 15010661 (-) True G27600
XM_034311697.1 mRNA downstream 1541 14278049 ~ 14443085 (-) False plxna1b
XM_026918449.2 mRNA downstream 272570 14158384 ~ 14172056 (-) True txnrd3
XM_034309688.1 mRNA downstream 296777 14129841 ~ 14147849 (-) False LOC113531636
XM_026922484.2 mRNA downstream 296779 14129841 ~ 14147847 (-) True LOC113531636
XM_034314008.1 mRNA downstream 400301 14030764 ~ 14044325 (-) True cfap100
XM_026922331.2 mRNA upstream 41929 14496220 ~ 14541322 (-) False chchd6b
XM_026922322.2 mRNA upstream 41929 14496220 ~ 14541322 (-) True chchd6b
XM_026922339.2 mRNA upstream 41929 14496220 ~ 14541321 (-) False chchd6b
XM_026928987.2 mRNA upstream 90898 14545189 ~ 14554473 (-) True tpra1
XM_026912700.2 mRNA upstream 103271 14557562 ~ 14560676 (-) True trim107
trnae-cuc_5 other downstream 52275 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 386181 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 537437 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 809974 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 944642 13498605 ~ 13499984 (-) False slc5a8l
XR_003403256.2 other upstream 418657 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 418658 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 843018 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 1002344 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 1007659 15461950 ~ 15469229 (-) False oxtr

Expression Profile