RNA id: XM_026912752.2


Basic Information

Item Value
RNA id XM_026912752.2
length 5914
RNA type mRNA
GC content 0.41
exon number 3
gene id lhfpl4a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13864944 ~ 13907189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGAGCAGATTTCTggcatcctgtgtgtgtgtatatcgcGCCATTCTTCGCTGTCTCGAGTCGCTGTATCTCGCGAGCGGAGGCGTCACCTTCGGTTTGTAGGTCGTTATCttgtgtgagagtgagaatgAGCGACGCCTGGCGCGAGCGCTGTCGTGCTGTGTGAATCTGCCCCCAGCCTCAATCAGCGCATCTCGTGTTCGGATCTGATGGGAGCCAAAGCGGATGCAGGTACAGCATTAACACCCGGACTGCTCTGATCGCCCACCAAATACAAGCATCTTGTTGCTGTTTGCACAACACAGggcctttttttcctttttttctttaattattattattatttttgcaatgtGATCTCTGTCGCTTGAGCTGTTTCTTTACACGGAaagcggaggaggaggaggggatcTGGACcgggatttcttttttttgttcattttttccccctcaccgGGCTCTACACTGAATCACGCTCCTGTTATAATCTGAGGATCGGGTGTGATGCAGGATCACGTCCGAAATACGAGAAAGCATCGCGTATGAATCGGAGCTTGACTGTAATTGTGATCTTATCTGTTTTGGCGTTTGTCTTCGCATTTTTGAGGGAACCCAGCTGGGCAGATAGGGGAGATAGAGACGTAGGGGAGAACGCATCAGAGCTGGAAAACCCAGAGtgctaaagagagagagagagagagagagagagagagagagaacaaggaaCATTAAATCATGCTGCCTTCGCAAGAAGCCTCCAAGATCTATCATGACAACTACATGCGCAACTCGCGGGCCATCGGCGTGCTGTGGGCCATCTTCACCATCTGTTTCGCCATCATCAACGTGGTGGTGTTCATCCAGCCCTACTGGATAGGCGACAGCGTAAACACGCCGTACGCCGGCTACTTCGGCCTCTTCCACTACTGCGTGGGTGAGGGAAGCTCGAACCGGGAGCTCACCTGCCGGGGCACGTTCTCCGACCTGAGCTCCATGCCATCAGGCGCCTTCAAGGCCGCCTTTTTCTTCGTGCTGCTCTCCATGGTGCTCATCCTGAGCTGCATCGCCTGCATGgcgctcttcttcttctgcaacACCGCCACCGTGTACAAGACGTGCGCCTGGATGCAGCTGCTCTGCGCTGTGTGTCTGGTGTTCGGATGTATAATTTTCCCGGCTGGCTGGGATGCAGAGGTGGTTCAGGACTTGTGTGGTGAGGAGACAGGGAAGTACACGCTGGGGAACTGCTCAGTGCGCTGGGCCTACATCCTGGCCATCATCGGCATCCTGGATGCACTCATCCTCTCTTTCCTTGCCTTTGTCCTCGGGAATCGCCAGAGCGACTTCCTTCAAGATGAAGTCAAGGCTGACAATAAAGATTGAGATCCGTGACACAAAGGATCCTCGTTTTGGTGTCCAGCGGTTCCATTAAAGAGACGCCACCTccacttctttcttctcttccttcttcatCCCCGTGTCCTTCTCTCCTTGTCCTCTCAGGTCTGCGTCTCTGACCTCAGTTAGGAAGCTGCTAGCTCAGCTCTTTGTAATATAGGACTGGCCTGGAGCACATTTCAAGAAGAGAACCTATTCTACATACGTACACCTGTTTAAAGAGAATTCAAAATCAagataaaaatcaataaaaaaaaataagctttaCAAATCCAACAACTCTGGGAAAGTGATGAACCTTACACAgtattattattctatattattaCTATGATTACAATGTTACAGTGATAATTATGCTTGCAACAGCGGTATTATGTtcaaatttacatattttatctAAAATGGGAAAAAGCAATTATTTCtagctttaaaaaatacattctaataatgaattaatgcaTATGTATAAGTGCTTGGGTGCTACTAGAGACACAGATGAATCAAAAAATCAAgccaaaaatcaaataaaagaaaaaagggggcAACATTTTGTACAGCACAAGATGTAATTTTGAAGACCAACTTTTTTTCCTGGAAGATTTTGAACTCCCTTCTTTGTACACGTGGTCAATAACCAGAGATTAGTATGAGAAAAGAAGTAgttcatttgtaaataatagATTTCTATGGAGACAGGGTACAGACATAACACATTTATTGACCCAAACTATATTCCCACTCCACTGCGGAGTGGACTTATAAAATCTCTCACCATTTCTTCACCTCTTGATCAAATGGGAGCTGCCAGTTCTCAGAGTTTATAGCTACACACCGTGAGGAGGCTATGTTAATGTCTGAaggttaaatatttattttggcaTGGAACTTTCCATTCACAAAGCTTCACTGGTTATTTAATCTTGTTCAccttttattatcatttttttttaattatcctCTGTAAAACAGCAGGGAGGTGACAAACAATGACTAACAAATGACAATTTTCACATTCTGGTTACAATAATTTCACTAATAGTTACTTAAACTTGCTTGTTATAATCCTgttacattttttctgtttgtaaGTTTGTTTCATACATTTTGTCTTGACGAAAAGCCCTGCATGCTGCATTCTACTCAGGCCCGACAAGTGGAGCACTGATAAGTGGTATTTCACCATTTCCCAGACCCAACGAGTTGAGCATCAGTGAGACCATACAACTACACAGCACAACATAGCTGACCATGATGGGTCAACATATGAGGTCAAGGAGCAGATGTTTGCCTTCAAGGGTATACATGCAGACTGAAGATTTATCTCAGTGTTAGCTTCTAAACTCATGTTAGCTAAGAAACATTTTGTGTTCTTCTGCAATGAACAAACCATGTGCTACAATCAGCCCCAggtaaatgaacatttttaattacagaaaaatccTTAACTCTGCACGAGTCTCAGTTCAGGCCTTTGTGGGTTTCACTACATTTGGAAATAGCTTCACACTTTGGAGTCCTCATGTATAATGTAAGGAGGAAAAACACTGTAATGTCAGTTTGGGGCACAGCTACGCAGTAATGTGATTGAAAGACCAATTTATTTTCAGGGTTTGAAAAGATATGACCACTGTGGTGGTGGAAGTCAGGTGCAGAACTGCCAGAACAGTACTAAGCTCTGAGATTCTTAACTAAGCATGGCAAATATACATGGCAAATATAAAGCTTCTGATGTTGCAATATTAAATCTGGTCTGTCAGTTGCAGCGACCCTGATTGGGGCTTTGAGCAGATTCATAAATCACTGAGGCAAATTGTGCAATTAAATACACCATGTAGATGTTTATATTCAAAACGTGTTTACAATGCCATTTAAGGTTGCATTTTTGTTCTCTGGTCAAtgttagtttttaaaatagctGTAATTTTCTTGTCTCTTCTCCCCAAAATCCTTTGCACATGTAACACCTTTTGTGCTCCCTGGACAGAGAATTTCTTGTACAGAGACTTTCCTTGTGCTCCACAAGAAAGTGTTACATTGATGCTGGGAATAATTTCCTGGGTCATTCAAAggacaatacacacactgcactaacCTGGAGAGAGGGTCTGGATAGCACTGTGCAGCTTTGTGGTTGGACACTTTCAGATACATGAAGCTGAAGTGTGAAATGTGAATTCCTCCATATGGTGCTTTATCCCTGTCCCCTTCTCAATCAGCATTCTCTCCATCACCCCAGCCTCAAATGCCCCACAGCCCCATGACCATGGAGGAAGGGGGGGATGAAGGGGATGGGAATGCAATCTGTGAATgggaaggagagaaaggagTGGTACAGACCAAGCAGAACTTTTCCTCAGTGAAGCCTGCAAAACAGAAGCAATGATCCCCTTGAAGACATGGCAAAGAGCCTCAGAATCCCTACATGTCCACCTTCTCCCTTTTgccacactccctctctctcaccgtCATCCATGAAGACTTATAAATGCAACTCTGTGTTTCCTTGATAATATATGAACAAACATAATAGTGGTTTTGATCACGTATAATTTTATGCCTTTTAAGTCTAAAATCTTCTTTTGAGCATTTTGGGGATCTAAGTGGTTCTAATGTTCTGGAGAATCCCTGTACTGCACAGTTTAATGTTTTCCATGTTACCACCCACCTGATTAAAGGCCAGATACCTCAGAAAAAaggcttctttttttatttactcatatcagaacaaaacattttttcttaaaatgtattcaaatatgcaaatgagacaaCAATATATTAGATAGGCACTAATTGGCATatcacaaaaaaattttaaacaaatggaTTAACTTGGAGTGACTTTTGAAGCTTTCCAACTATATAATGATTCAAAGtaaaagctatttttaaaaagtaacctgaaaatttttttactttttttggaAGCAAAATCACCATTTTTGCCTGTGGTGCCTGGCCTTAAGATAGCTGAAGAGTTGAATCAGGCATGTTGGAGCAGTAAAAACACTAGACTACAGAACAGGGGTCTCACACAATGTGATCTGGGAACCACTGAAAAACAGCTTACTGTCCTCAGGAGTTTTTATTGTAGTGGGAGTGAATCATGTATGGTTTGGAAAGGAAAGAACTGGATACAGAAATACACTTGGATTATTTTTACTTCACAAGATTAAAGGTCATGCTTTAAACTGCAGTATTATGCCATATTGTGTATGACATCGACCGTtctattattaaaataagaGCAAGAAAAGTAAATAGCATGATTTGAGAATAATAACTGCGTGTAAAGGAATGAGGGCACACACTCAATGACGTGGGTTGGCACAAGTTCTAGGTACAAGTCCATGGGCCCtgtgaaaaatatttagaaaggttttactgtgtgtgttttggatgttCACAAAGCCAGTCTTTACATCACAACTCCTCCATCAACTGCCTGCattaatccatccattcacctttaaaggaaaatgtgAACAGAaactctttttttgttgttttgttgtttcattGTGCAGACTGTACTGTCTTATATGCTGAAACATTTGGATTAAGGTCCAAAAATCAGAGTCCACTATCAAGAACTGTTACATTTACTCAGTTGTCAAATTTTAAAGCATGCACATGCCTCAGTACTACTACTTCCTTTAGTGTGTACTGAACAATTGTAGCTTTTATTAGTGAACAATGATGTTATCTTCTTTGAGGAAATATGATTaaacaaaactgcatttttttcacttcttcatAACTGATGTCATAACTGAAATTCAGTGGATTTTGAATTTTGACCCTGTTTGTACACACAATGGTTTGACCATTAACTATTTGCAGaacagtttttttctctcaattaATTCTACTtctgtgtgtaattatgtgCACTCAGTATTGAGTTAGGTTTGTCATTTGAAAAGAAAGATTGAGGAGATGCAAATGGAAaatgtgatgtgcttttttccACGTCGTAACTGTGGCCATGATGTACTGCAGCTGCTCTGCTGCTGTCTATCAATAACAATCACAATGTCACTATCCTATCAAAAGCAATCCTTTCAAGCAGTTCATCATTATGTATACAACTGGAGAAACACAAAGCACTCCAGTCTTGGAATAGTTATTAATCTGCTACTAATTGCTGTCACTTTACATCTCCCTTCTCTCTTTAATGATTTTGTAACTTTCTCTGCAATCTTTTGCTTGGAAATAGATGTGCCAAACCGAACTAAGCAGACTGCTGTGGACAGatatgactgatttttttttcagtatgtattttttcccctgtgCAAGTGTTGAATGCCTTTCTGTTGgagttttggggtttttttggtctagttataaatgttcattttaatctgATATTTTCTGGGATGCTGCGATGTCTCttcataaaatgaaatatgttatGTGAATGTTTCTGAAAGATTGTCATGGGGGAGTGCAAAATGGCTGACATCGTCACCGCCACTTATACATTGTTGGTGTTTTAaaagatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31924 lncRNA downstream 37232 13835830 ~ 13836482 (-) True G27043
TU31923 lncRNA downstream 37365 13835830 ~ 13836349 (-) False G27043
TU31888 lncRNA downstream 82348 13788793 ~ 13791366 (-) True G27016
TU31830 lncRNA downstream 178894 13655472 ~ 13694820 (-) True G26970
TU31990 lncRNA upstream 120113 14027302 ~ 14028884 (-) True G27105
XR_004580178.1 lncRNA upstream 156767 14063956 ~ 14099689 (-) True LOC117599875
TU32060 lncRNA upstream 249749 14156938 ~ 14158099 (-) True G27168
TU32061 lncRNA upstream 265483 14172672 ~ 14172921 (-) True G27169
XR_004577242.1 lncRNA upstream 331606 14238795 ~ 14251264 (-) True LOC117596067
XM_026926234.2 mRNA downstream 131154 13738543 ~ 13742560 (-) False LOC113533843
XM_026926224.2 mRNA downstream 131160 13738543 ~ 13742554 (-) False LOC113533843
XM_034298377.1 mRNA downstream 131162 13738543 ~ 13742552 (-) False LOC113533843
XM_034298386.1 mRNA downstream 131388 13738543 ~ 13742326 (-) False LOC113533843
XM_034298371.1 mRNA downstream 131456 13738543 ~ 13742258 (-) True LOC113533843
XM_034314008.1 mRNA upstream 123575 14030764 ~ 14044325 (-) True cfap100
XM_034309688.1 mRNA upstream 222652 14129841 ~ 14147849 (-) False LOC113531636
XM_026922484.2 mRNA upstream 222652 14129841 ~ 14147847 (-) True LOC113531636
XM_026918449.2 mRNA upstream 251195 14158384 ~ 14172056 (-) True txnrd3
XM_026909744.2 mRNA upstream 370860 14278049 ~ 14457232 (-) False plxna1b
TU31814 other downstream 239062 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 373730 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 634908 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3383419 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 4005436 9863367 ~ 9868278 (-) False G24516
TU31994 other upstream 143212 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 485091 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 965759 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 965760 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 1390120 15297309 ~ 15299019 (-) True G27843

Expression Profile