RNA id: XM_026919856.2


Basic Information

Item Value
RNA id XM_026919856.2
length 3522
RNA type mRNA
GC content 0.49
exon number 11
gene id grm4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12568700 ~ 12730578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACTGACGCGCCTCAGGTACGGACCTCCGCCTTCACTGCACTGTGGCCGAGCCGCCGTTAGTCATGACTCAGTGAACGGAGAGTGGACAAAATGGAAAGTGCTCGGCGCTCGAGAGCGTTTCAGCACCACTTCAGCTGGACAGCGCAACAgcttcttttttgctttttcttctcttttctttctagaCAGCATCCCGAGGTGGGGGATTTCTTTTTGAATTGCACGAGCAGCCGTGATGGAGTTCGTCGAACATCATCCGGTTAAGAAGACAGCAAGCATCCCGCTTTGGTCCGAGACTCAGCAGATGATGCGGGGAGTCCTGTAGGCACTGCGCAGCCAAGCCTCCAGCAGCACCGGACAGCACGgAAGTAACTCATTGGTGGGCAAATCTCTGTGGGCCCCAGGAACAGACTTCTGTTCATCTGCTTTGGAAAAAAGAGACTGCAAATCCAGTGGAACAGAAAGATTCATGATTTATGGTTAAGCTTTAATCCCAGCTAGAGGTGTCTTAATGGAGGGAAAAAGGGAAGTGTGGCAGAGTTGGTGACACTATCCAACAGACTACTTCACAAATCTCAAATGACACTGTCTCCTTCATGGACTCCTATACACATCATCTAATAAAGTAAGCAAcagttttgattaaaaaaaagagagaactgaGTAAACACTGGGCTGCTGAAATGTCTCCTATCTTGCTCGTCGTTGGTGGGAGGACCATCCATCttggtttgtgtttgttgatTTTTCTCAATCTCTTCCTGCTCACGTTGGAAGCAAGACCCAAGGGCCCCGGCCACACACATCTAAACTCGATCCGCATTGATGGAGACATCTCCCTGGGAGGCCTGTTTCCAGTTCACGCACGAGGTCACAATGGAAAACCCTGTGGGGAGCTGAAGAAGGAGAAGGGCATCCATCGTCTGGAAGCCATGCTTTTCGCTCTGGACCGCATCAACAATGACCATGAGCTTCTCCCTAATATCACACTGGGGGCCCGTATTCTTGACACCTGTTCACGAGACACACATGCTCTAGAGCAGTCACTCACTTTTGTCCAAGCGCTCATAGAGAAGGATGGCACAGATGTGAAGTGTCAGGGAGGTGGCTCACCCATCATCACCAAGCCAGAGAGAGTTGTGGGAGTGATTGGGGCTTCCTCCAGCTCCGTGTCCATCATGGTGGCTAACATCCTCCGCCTGTTTAAGATCCCTCAAGTGAGCTACGCTTCCACAGCCCCAGAGCTGAGTGACAACACGCGCTATGATTTCTTCTCTCGAGTGGTTCCTCCAGACACCTACCAGGCCCAGGCAATGGTGGACATTGTGCGACACATGGGGTGGAACTACGTTTCTACTGTAGCATCTGAGGGAAATTATGGAGAAAGTGGAGTAGACGCCTTCATCCAGAAGTCTCGTGAGGATGGGAGTGTCTGCATCTCCCAGTCAGTTAAGATCCCTCGTGAGCCCAAAGCAGGAGAATTTGACAAGATTATTCATCGCCTGGTAGAAAACCCAAATGCCAGAGTAGTCATTATTTTTGCAAATGAGGATGATATAAGGAGACTGCTGCAGGCAGCAAAGAAAGCCAATTTGACTGGTCACCTCTTGTGGGTAGGATCAGATAGCTGGGGTTCTAAAATTTCTCCTGTGCTCCACCAAGAGGAGATGGCTGAGGGTGCAGTGACTATCCTACCTAAGCGCCAGTCCATTAAAGGGTTTGATCGTTATTTCATCAGCCGGACACTAGAAAATAACAGGAGAAACATCTGGTTTGCTGAGTTCTGGGAGAACAATTTCAACTGCAAGCTCAATCGGCATGCCTTGAAGAAAGGATCAGGCATAAAGAAATGTACAAATCAAGAGAGGATTGGAAAAGACTCAGCCTATGAGCAGGAGGGAAAAGTTATGTTTGTGATTGATGCTGTATACACCATGGCTCATGCTCTCCATAACATGCACAAAGACCTGTGTCCTGGCAAGGTGGGACTTTGCTCCAGAATGGACCCTATCGATGGAACCCTCCTATTAAAGTACATCCGTGAAGTGAAGATAACAGGCATAGCTGGCAATCCAGTGCAGTTCAATGAGAATGGGGATGCTCCTGGCCGCTACGATATCTACCAATACCagataaataacaaaacagcaGAGTACAAAATCATTGGCCACTGGACTGACCAGCTGCATCTTAATATACCAGAGATACAGTGGCCAGGTGGTATAAAGCAAATACCCTCCTCCATCTGCAGTCAACCTTGCAAACCAGGCTGGCGTAAGAAGGTTGTGAAGGGCATCCCATGCTGCTGGCATTGCGAGCGCTGTGATGGCTACCAGTACCAGGCAGACCCATTCACCTGTAAAATGTGCCGCTTCGACTTGCGCCCCAACAAGAACCATACAGGCTGCCAACCAATCCCAATCATCAAGCTGGAATGGAGCTCACCATGGGCTGTCATACCTGTACTCCTTGCCATCATGGGCATTATGGCCACCTTGTTTGTGGTGGTCACCTTCATACGCTACAATGACACTCCAATCGTGAAGGCATCAGGAAGGGAGCTAAGCTATGTCCTGCTTACAGGCATCTTTCTTTGCTATGCCACTACATTCCTGATGATATCATCTCCTGATGTTGGGATCTGCTCACTCCGACGCATTTTCCTAGGACTGGGGATGAGTATTAGCTATGCTGCATTGCTAACCAAGACCAACCGTATTTATCGTATTTTCGAGCAGGGAAAGATGTCAGTGAGTGCCCCACGTTTCATAAGCCCAGCATCCCAGTTATTGATCACTTTCAGCCTGATCTCAGTCCAACTATTAGGGGTTTGTATTTGGTTTGTAGTGGACCCTCCTCAGGCTTTTGTGGACTATGAGGACCAGCGCATGGCGAATCCAGAGCTGGCACGGGGTGTGCTTAAGTGTGACATCTCTGACTTGTCACTCATCTGCCTGCTGGGGTACAGCATGCTGCTAATGGTCACATGCACAGTCTATGCCATAAAGACGCGTGGGGTGCCGGAGACCTTCAATGAGGCAAAGCCCATTGGCTTCACCATGTACACCACCTGCATTATCTGGCTGGCTTTCATACCCATCTTCTTTGGGACATCACAGTCCACAGAAAAGATGTACATCCAGACAACGACTCTAACCATCTCAGTGAGTCTGAGTGCTTCTGTGTCTCTGGGACTGCTCTACATCCCCAAAATCTACGTGGTACTCCTCCATCCTGAGCAGAATGTGGCCAAGCGGAGCACACGTAGCCTGAAGGCTGTGGTCACTGCTGCCACCATGTCCAACAAATTCAACCCGAAGGCCAGCCTGCGGCCTAATGGTGAGGCCAAGACCGAGCTGTGTGAGAACCTGGAAACGCAAGATGGAGGAGAGATTTGAACACAGCCTGCTGACTCCATCCATACCTTGTGGTCTAAGAAGATCATGAGAAGACCCTGAGGGAAAAGTGGGATGTCCATGGTGTTTCAGTGATGGTACTGTATCTCACATCAATAACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30865 lncRNA downstream 2640 12563790 ~ 12566060 (-) True G26137
TU30866 lncRNA downstream 7457 12561032 ~ 12561243 (-) True G26138
TU30861 lncRNA downstream 10539 12557600 ~ 12558161 (-) True G26134
XR_003403116.2 lncRNA downstream 15083 12552753 ~ 12553617 (-) True LOC113530116
TU30851 lncRNA downstream 66613 12501698 ~ 12502087 (-) True G26124
TU31146 lncRNA upstream 78980 12794238 ~ 12794439 (-) True G26385
TU31148 lncRNA upstream 85749 12801007 ~ 12801233 (-) True G26387
TU31363 lncRNA upstream 355337 13070595 ~ 13070823 (-) True G26570
TU31379 lncRNA upstream 389199 13104457 ~ 13106086 (-) True G26585
TU31418 lncRNA upstream 453995 13169253 ~ 13169662 (-) True G26610
XM_034313833.1 mRNA downstream 25724 12519735 ~ 12542976 (-) False igfn1.1
XM_034313828.1 mRNA downstream 25724 12519735 ~ 12542976 (-) True igfn1.1
XM_026919793.2 mRNA downstream 25725 12519735 ~ 12542975 (-) False igfn1.1
XM_026919810.2 mRNA downstream 25725 12519735 ~ 12542975 (-) False igfn1.1
XM_026919818.2 mRNA downstream 25726 12519735 ~ 12542974 (-) False igfn1.1
XM_034297751.1 mRNA upstream 50190 12765448 ~ 12776957 (-) True im:7151449
XM_026913537.2 mRNA upstream 74466 12789724 ~ 12902024 (-) False LOC113526469
XM_026913546.2 mRNA upstream 74466 12789724 ~ 12902024 (-) False LOC113526469
XM_026913528.2 mRNA upstream 74466 12789724 ~ 12902024 (-) True LOC113526469
XM_026913553.2 mRNA upstream 77434 12792692 ~ 12902024 (-) False LOC113526469
TU29342 other downstream 2078405 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 2700422 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 2849730 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 3126890 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 4084586 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 523446 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 783347 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 917004 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 1158456 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 1335143 14050401 ~ 14058445 (-) True G27107

Expression Profile