RNA id: XM_026913537.2


Basic Information

Item Value
RNA id XM_026913537.2
length 6813
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC113526469
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12789724 ~ 12902024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTTGCTTCACCGGTAGTTGAGTGCGCGCGCGCGTCGGAAGCGGCTGTATGAAATCATCGCCTGTGGAAGACAAAACTGCACGCACGGTTTGGCGATTTGAAGACGCGTGTGGTGTTACTGGCGGTGTGGAGGATAAACCGGACTGCTCGATCCGCTTCCGAGTGCGTGTGGATCAGCAGCTGCTGGTCAGTGATGTCAGCTCCTTAGATGTTAAGTGCAGGCTACAGCTGCGGATCTACAGCGCGTCATGTAGCGAGACTCGGCTGTGAGTGATGAGGTTGGAGGAGCAACATCTGGATACTGCGCGCTGCTGTTGCGCTGAAAGCAGAGCACCTGATTCCTGCTGCAAGCTGAACTGAGGGAAGAAGAGGAGCAGCATGTCCAAAGCGCTGAAGAGGAAGAAGCACTGGTCGGCCAAAGTGCGCGAGTGCGCCGTGTCGTGGGGAGGCGCGGGCGAGTTCGGCTCCGTGGTCGAGCTGCTTGGAGGAGCTGAACATGGCCTCTTCCCCTTCCTCGGACACATGGACCTCGACGCGCTCGTGTGTCACGTTGGCTCGCTGCCGTACTACGGGGACGTGCTGCTGGAGGTGAACGGCACGCCCGTGAGTGGCCTCACCAACCGAGACACGCACGCCGTCATCCGCCACTTCAGAGAGCCCATCCGCATAAAGACCGTCAAACCAGGCAAAGTGCTAAACACAGACTTGAGGCATTACCTCAGCTTGCAGTTCCAGAAGGGTTCACTGGACCACAAATTGCAGCAAGTCATCCGGGACAACCTTTACCTGCGTACTATAccatGTACAACCCGTGTGCCCAGAGAGGGGGAGGTTCCTGGAGTGGACTACAACTTCATCAGTGTAAATGACTTCAGGATCTTGGAGGAGAATGGTTTACTCCTGGAGAGTGGAACTTATGATGGAAACTACTATGGCACACCCAAACCCCCTGCAGAGCCCAACCTGGTTCAGCCTGATCTGGTCGACCAGGTGTTGTTTGAGGAAGAATTTGGCACAGAAGTCCAACGCAAGCGCACCACCTCCGTCAGCAAGATGGACCGCAACGACAGTGTTGTCcctgaggaggaggatgatgaagagCGGCCAGCGCTGCCAAACGGCcttccagagGGAAGTGAGGAGTGGAGGAGGCCGGTGCCCAGCTACACTCAGtctaacagcagcagcagtgttacTCGTGGaggtggcagcagcagtagtGAGCTTGTTCGCACCTGGAGTTCTCTCTCCAGAGATGACAGCCTTGAACCCCTACCATACAACTGGGAGATGGCCTACACTGAAACGGGCATGGTCTACTTCATTGATCATAACACAAAATCTACCACGTGGCTGGACCCTCGCCTTGTCAAGAAAGCTAAACCACCTGAAAAGTGTGAGGATGGAGAGCTTCCATACGGCTGGGAGGAGATCGAGGACGCACAATACGGCACATACTATGTTGATCACATAAACCAAAGAACCCAATTTGAGAATCCAGTTGTAGAAGCAAAGAAGAAACTTGCACAGGAGGCTGCAGCTGCAGCACAAAGCCAAAAGGGGGCAGCACCTGCTCCAGGTGATGAAAGGGGAACTCCAGGTTTCACTCGTGACCCCACTCAGCTGAAGGGCGAGTTATATCACACGGCTTTGAAAAAGAGTGCTCAGGGCTTTGGCTTCACCATCATTGGAGGAGACCGACCTGATGAGTTCCTGCAGGTGAAGAATGTCCTGGCAGATGGACCAGCCGCACAAGACAACAAGATGGCCTCTGgtGATGTAATTGTGGAGATCAATGGCACACTGGTTTTGGGTAAGACCCACAATGACGTGGTGCAGATGTTCCAGTGCATCCCCATCAGCCAGTATGTGGATATGGTCCTGTGCCGTGGCTACTCCCTGCCCCCAGACGTGCAGGAGGACAATGAAGACCTTccccctcctccacctcctcctccctcgGCTGGTGAAGTGGTAACAGCTGTACCCCTCATCAATGGGCAGCCGCTGCTAGTGAAGGGTGATGCTTTGCATGCTTCCTCCCAGGAGCTCCACTACCTCACTACCGATGCCAGTGGGCGGCCTGTTGTGGCGGCGTTACCCAGCATTCCCACTGGTGCCGATGAGAGGCCTGAGGGTGGAATGTTGCAGCCGGAGCTGGTCACTGTGCCCCTGGTGAAAGGCCCAGGAGGGTTTGGATTTGCTATTGCTGACAGTCCGCTGGGCCAGAAGGTGAAGATGATCCTGGACGCACAGTGGTGCCGTGGCCTGCTCAAGGGTGACGTCATCAAAGAGATCAACAGGCAGAATGTCCAGACATTGAGCCATGCACAAGTGGTGGACATCCTCAAGGAGCTGCCTGTGGGAAGTGAGGTCAACCTGCTGGTGCTGCGAGGAGGTCAGACTTCACCAATAAAAAGTCTTAGACCTAGACAGGAAATAAGTGCCAGCCTTGAGACTTTGGACCAATGCCATGATGTCGGAGCCCCCCAAGCCCTCACATATTATTCAAGCACGTTACCCAGTAGCTCTCCGAGACGAGATGTCACCCTCCGCCAGAGCAAGCTCAAAGGCACTGCACAGGAGTCTGGACAGAGAGCAGTGCCTCAGTATAAAGAGCTGGATGTGTTTATAAAGAGAGATCAAAAGACAGGATTTGGCTTCCGTGTGCTCGGAGGAGAAGGACCTGAACAGCCAGTATACATAGGTGCTATCATAACCCAGGGTGCAGCAGAGAAAGATGGCCGTCTGAGAGCAGGGGATGAGCTGATGGCCATCGATGGCATCATAGTAAGGGGCAAATCCCATAAGCAAGTGCTGGATCTGATGACCAATGCAGCTCGCAATGGACAGGTGCTGCTGTCTGTGCGCCGAAAGGTCATCTACAGGGATGTGTCTGATGATGATGGGGCACGGAACCTGGCTCCAGCGCTAATGAATGGTTCTCCAAAAACCCCACGTGTTCAAGTCCCAAGTGTCTTGGACCATGAAATGATGGATATTACACTCCATCGCAAAGATAACGAAGGCTTTGGCTTTGTCATTCTCACTTCCAAAAGCAAACCACCACCTGGAGTGATCCCTCATAAGATTGGTCGCATCATTGAGGGCAGTCCAGCTGATAGATGTGGTCTGTTAAGTGTGGGTGACCGTATCTCTGCTGTTAATGGCCGGTCCATCATCGAGCTCTCTCACAGCGACATTGTGCAGCTTATTAAAGATGCCGGTAATGCTGTCACACTCTCTGTAGTTCCTGAGGATGAATACAAAGGCCCGCCCTCGGCAGCCAGCTCAGCCAAACAGAGCCCAGCGCTGCAGCACAGGACACTGAAATCCAGCACACAGGAGGAGAGGTATAATCTAGATCTGGAGGAGATCAGGGATGAGTTGGTCTGGGCCgaatataaaattattaccgataatgaaaaagaaacactaTGTGTTACAGGCTCCAAACAGGGTTGTATTCTTGTGGAGTTGGAGCGTGGCCCACGTGGTTTTGGCTTCAGTCTGAGAGGAGGGACAGAGTATAACATGGGCCTCTACATCCTGCGATTGGCTGAGGATGGCCCTGCAATTCAGGATGGCAGGATTCAGGTTGGCGATCAGATAGTAGAAATCAATGGGGAGCCTACGCAGGGTATCAGTCACACCAGAGCCATCGAACTCATCCAGGCTGGAGGAAACAAAGTACTGCTGCTCCTGAGACCTGGACAGGGGCTTGTGACTGACACCAGCCCTGAAGCACCAGATCCAGTAGTCTCTTCACCTCTAAGCTCTCCAGATGATGTTTTCTTCACAGAGCAGCTGCCATATGAAGCTTCAGCCTTTTCATTATTCTCACCTCTTGTTCAACTTTCCTCACCCTCATCATCCTTAGGGAAGAGAGAGGATAGAGACAGGAGGAACTCTTCTGCCCTCTCTCCAAACCTTGCCAAGTCCAGGTCCAGTCTTTCTCCTCGTCCAAAAGGCATCAGCAAAAACAGGAGCCCCAAATCTCTAGACTCTGCTTCTCCCTCAACATTAGAACCAATATGTGACAAGAAAAGTAGGTCTAAAGAGTACAATATTGACTCTGCAAGTACAGAAAGGAAACTTAATGGTCCATCTAAAACCAAAGATGAATCTCACAACTCCCGTAGGTCCAAAGAGAATCTACCACACTGCTCACAGGATTCAGTGAAGTGCAAGAAGTCCAGCAAACACCAACCGAGCTGCACGAAAAGTCACAAACAGTCAAATCAGTCAGGACAAGAAGTACTGACCAATGGAAAAGAAGATTGCTCAAAGAGGTCATTTACAAGGGAGGAAAAGAAAGTTAGTAGTGAGAGGGTAGGAAGGGATTGTTCAAGAGGAAGGCAGAGAACCAAGAAGCGAGAGGGCAGGAACAGAAAGACTGCTGAAACAAATGGACAAGAAGTGGTGGTGGAGGCTGGGGCAATGCCAGAAGAAGATGTGAAGCTAAAAAGCATGATGAGAAGGAAAAAGCAACCACAGGACATGGAGAAAGACCAGGACACCAGCAAATCCAGAGTAAAAAAGAGCCAGAGTCATCATAAACATGAAAAAGAGGACAAACTACAGCAAAGAAGGAGTAAAGAACTACAGAATGGttcaaagagaaaaacacagggTGAAGAAAGAGATATAGAGGTATATGATATAGTAATACAAAAAGAGAACCAGAATGAATGTGAGGAAGAACTGACCATTACAGATGCGCCAGATCAAAACGATCACTGGACAGTACCCAGCTTTGCACGCATTCTAACTCATGAAGAGGTCGTGCGAGATTTGTATGGGTAACTGAAGCATGCACCACACATTGTGGAGGGAGCTGTGGTGTCTTTGCTTTTATCAGAACACTGTTCTGCCACTTTCACACTTCAACCATGTTTACAAAATTGCCATACTCTGTCTCTCCCTTCCCACAGACACTCATCTGAAACAGTGTACAGTGGGTTTCATTATCCCACTAAGTCCAAATTTCTACTTTTTAACACACAGGATGGGTAAAAGCAGTAAAAATAATAGTTGCTGCTATTCTGGTTTTATTCCCATGCTCTTATTCCCATGCTGGGGGCAATGTTCACTGAGGAGAGGCTTAGACTAGAGCATCTGTTCCCTATGAAACATCTGATGTGACTTTGTGGTCAAGGCAACAGGACCTCAGTTCTGCTGTAATGTTTCCACTTTGACAGCTTTGAAAAACGTGGATTCTTGGCTGTCCATCACAATGCAGTTCATTCATATGCAATGAAAGGGACCATACTTCCCTGCCAGTCACCAAAATAACGAACATGACTTTTATGCTTTGAGTTTTATTATATATCCTGGAGTCATATTTTCCCTACTGCGATTATTGCCTCTAATACTGCATGCAAGAACTGACCTTTATCCCTCAACTTGCTTTTGTTGCATGCTTTTGAAATATGAGTTTCAACCACACTTTTAACAAAGAACTTTACATAGAGGTTTGAGGCTGAATTCTCTGCAGCAACTAGCTTTAAAGACTTTTTGTAGACTGTTCTCTGACACTGACATGCCTAAATTCTTGATCTTCAAatcgtattattattattattgcaaaagACCAGAAACTTGTGCTTCTTTGCTATTTCTATGAAACCTCCATTAGTTGTGTATAAAGCATAGAGACATGTAGCCATATCGACTCACTGAACGTGATGTGTACAGTTACGTAAAGTAAGCACTGCAGTAGCTTTTACTTGGTAGCAACTATTTTGACCCATCACATGACTAATGGTACATGCAAAAGTGTCTTCAAATGTCTTGCGATTCTGGGTGTCTCATTTCTTTGACTTTTATTGGATGTCTGTCTTCAAACCAAATGTAAATGCAGGCAGTTGAGCCCCAGAACTGATGAAAGAatttcatatataatatatttttcagaaGATTATTATGGTTCACACTTCTACAACTGTCTCACACATCTGTGTGAATGATAAATGGTTCAATATATCAAAAAAACCAGTCTATGGTAAGGTGAAAATTTCTCAGAATAGGAATATTGCAGGTATTTTGTCCACTGATTTATCATTTTCATAAACCTGTATTCACTTTTACTCATAAGAAAAATGTTGTGTAGCATCATCAAGGGCTGATTTATGATAGTGGACTGATGGACTCATAAGGGGACATGCTTCATCAAAACCAAAGTATTGGTgaacattcagtgtgtgtgtgctgtgtgtatgcCGTGATTCACCTCAGGTTGTGAACTGATATAGAATAGCTAATGGTCTTGTGTGATAGCTTTGATGTATTGAAGCCATTCAGTAGCACCATAAGCTTTTCAGGCTGCTCTGATCTGGAACAAATGATGAATCATTGGGCACATCCAGAAAGCATACAGTTCCTTTATTCTTTTATCAGTGACAAATGATCAAGAGTTGTGGTGAGATACAAACAGGATTGCCACCAATTTATGTTGGGAACATCCAGCTGAATTCCAGTTTGATTGAAAATGGACACTAAAGAAAAATGCCCTAAGGTTTCAGCACCATGCCATTAACTATGTACAACCCAGATCTGTTAGTAATGTTATGGAATGAAATGGTGTCCTCTTACATCATTTCATCACCAGGTGATGAAATCCGAATGGTCTGTCTATGTACTCCaagatgtaaatgtttatatattgtaCAGCGCCTTTATAAACGTGATGTTGTGTGCATTCACATAAGAAAGAATAGAGATCTGTAAAttgatgtcattatttttgtatttaaatattacaaaaaaatttaaggtggataaaaataaaataacataccCCTGTTCAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30865 lncRNA downstream 223664 12563790 ~ 12566060 (-) True G26137
TU30866 lncRNA downstream 228481 12561032 ~ 12561243 (-) True G26138
TU30861 lncRNA downstream 231563 12557600 ~ 12558161 (-) True G26134
XR_003403116.2 lncRNA downstream 236107 12552753 ~ 12553617 (-) True LOC113530116
TU30851 lncRNA downstream 287637 12501698 ~ 12502087 (-) True G26124
TU31363 lncRNA upstream 168571 13070595 ~ 13070823 (-) True G26570
TU31379 lncRNA upstream 202433 13104457 ~ 13106086 (-) True G26585
TU31418 lncRNA upstream 267229 13169253 ~ 13169662 (-) True G26610
TU31421 lncRNA upstream 273053 13175077 ~ 13176159 (-) True G26613
TU31647 lncRNA upstream 591488 13493512 ~ 13495861 (-) False slc5a8l
XM_034297751.1 mRNA downstream 12767 12765448 ~ 12776957 (-) True im:7151449
XM_034313853.1 mRNA downstream 59146 12568757 ~ 12730578 (-) False grm4
XM_034313851.1 mRNA downstream 59146 12568757 ~ 12730578 (-) True grm4
XM_026919856.2 mRNA downstream 74466 12568700 ~ 12715258 (-) False grm4
XM_026919846.2 mRNA downstream 74846 12568757 ~ 12714878 (-) False grm4
XM_034313404.1 mRNA upstream 3088 12905112 ~ 12923987 (-) False lrig2
XM_034313403.1 mRNA upstream 3088 12905112 ~ 12923987 (-) True lrig2
XM_034310908.1 mRNA upstream 47661 12949685 ~ 13031045 (-) False si:dkey-166d12.2
XM_034310911.1 mRNA upstream 47661 12949685 ~ 12991939 (-) False si:dkey-166d12.2
XM_026925698.2 mRNA upstream 47661 12949685 ~ 12990191 (-) False si:dkey-166d12.2
TU29342 other downstream 2299429 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 2921446 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3070754 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 3347914 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 4305610 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 336680 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 596581 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 730238 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 971690 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 1148377 14050401 ~ 14058445 (-) True G27107

Expression Profile