RNA id: XM_034313404.1


Basic Information

Item Value
RNA id XM_034313404.1
length 6396
RNA type mRNA
GC content 0.46
exon number 18
gene id lrig2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12905112 ~ 12923987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCtgcagtgcgcatgcgcggaTGAGGGGGCGCTGTAGCACACAGAGGAGTACCATGTCGTCTTGGGAAAAACGCTTTTGTTTTCCTTTGCAGGAAAGTCGTGGAAGAAAACAAGGAGCATTTTGGTAACGCGCTGTGTTGCTCTCGGAGAAGTTTATATGTGATGGATTATTTTAGGCTACTCGACAGGGACTTTGGTAGTTTGTGGGCCGTTTGACGCCTCGCTGAGGAAACAGTTACCGGAGCTGCTGCAGACTGGAAGGcggaaggagaagaaggagaaggagaaggcaATTCCGGAGGAAAGGACGGAAAAAAAACTCCAGCCATGGATCAGAGATGCTCTGCTTTTATTCGGGAGCGGATTTGTCACAGTAGTCGATTTGACTGGAACCCATGCGCTCATTTAGAGGCAttataaaacttattttttatcCGTCTTCTCCTATTAATGCCGTAAATAAAACTGTtagtgagtgagagagtcaAAATGGCGGCGGCCTGGCCCATCCCCCAGGCCCTGTTCATGATCATACTGAGCGCTGCTGTGGGCCTGGACCCGTGTCTGTCACCCTGTATCTGTTCAGAAACTCCAGACGGCACTAAACTTGTGGACTGCAGTCGGAAAGCGCTGTCTGTTGCTCCTGTGCCAATCCCAGCATGGGCCGCTCATGTgtcTCTGAATCATAATGAGTTCTCAAGTGTGCCTTTTCTTGGAGATGCTTCCTCAAACATCACTGCGTTGTCTCTGGTAAATAACCGAATCTCTGAAGTGGTGGCTGAACAGCTTCTGCCCTATTCAGTCCTGGAAAGTCTGGATCTGAGCTCCAACTCCATCTCAGAGCTGAAAGCTGGATCATTTCCTCCTATGCAGTTGAAATACCTGAATCTGAGCAACAACAAAATCAGCTCTCTAGAACCGGATTGCTTTAACAACATCAGCTCTCTGCTGGTGCTGAAGATAAACAGGAACCGGTTATCACTACTGCCTGCTAAAGTCTTCACTCTGTCTCAGCTGCAAATTCTGGAGTTGAAGCGCAATAAGATCAGAGTGGTAGACAGTTTGATCTTCAAAGAACTGAAGGCTCTGAAGTCTCTGAAGATGCAGAGGAATGGCATCACGAAGCTGATGGACGGAGCTCTTTTTGGACTTGCTGATATGGAGGAATTGGAGCTGGAACACAATAACCTCACCGAGTTAAATAAGGGTTGGCTGTATGGCCTGCACATGCTCCGTGTACTCCGACTCAGCCACAACAACATCGGTCTTGTCCGAGCTGATGCCTGGGAGTTCTGCCGCCGACTGGAAGAACTAGATCTGTCCCATAATCACTTGAGTCGTCTGGAGGACTGGGCTTTCTCTAGCCTCGGGCTGCTGCAGAGTCTAAACCTGGGCGAGAATCGCATCACGCATCTGGGAGAGGGAGTTTTTGACAGCCTAGCAAACGTCCGCACGTTagataTCCGTAACAACGACCTATCTCTTGTTATTGAGGACACGGTCAGTTTGTTTGCGGGCATGAAAAAGCTCAATACATTGGTACTTCAGAAGAACAGCATCAGGACCATTACAGAAAAAGCCTTTGAGGGTCTGAAGGAACTAGAGCATCTAGATTTGAGTAAGAACCGGATCATCTCTATTCACCCTGAGGCATTGTCTCGCTTGAAACTCAAATCCCTTGATTTGAACACCAGCGGTCTCCTCTGTGACTGCAGTCTGAAGTGGCTCGGCCAGTGGCTCACTGACAGCCTCTTCCAGCACTCATGCACCGCTGTGTGCGCATATCCTGCCCCTTTGGCAGGCAGGAGTGTCTTTAGCGTCCCCCTGGAAGAATTTGTGTGTGATGGCTTCCCTCGGCCACAGATCAGTGGGAACCCCAAGACGGTGGTGGCCCTGCGCAGCACCAACGTCACTCTCAACTGCTCTGCCTTCAGCACTAGTGACTCTTCCATGAACGCCACCTGGAGGAAAGACAAAGAGGTGCTGTCTGATGCGCAGGTGCAAAACTATGCCCGCTACCAGGACCAGCAGCTCATCTACACCAGCATGCTCCATCTGCTTAATGTTAACTTCACTGATGAAGGACGCTACCAGTGTGTAATTTCCAACAACTTTAGCGCGAACTACTCCACTGAGGCCAAAGTGACAGTTAATGAGCTGCCCTCCTTCCTGAAAACACCCATGGACCTGACGATCCGGACTGGCACCGTTGCACGGTTGGAGTGTGCGGCAGAGGGACACCCTCCACCCCAGATTGCCTGGCAGAAGGACGGGGGCATCAACTTCCCTGCTGCCCGTGAGAGAAGGATGCATGTCATGCCCGAAGATGACACGTTTTTCATTGCCAATGTGAAGGCGGAGGACATGGGCGTGTACAGCTGCACTGCCAAAAACGAGGCAGGCAGTCTGTCAGCCAATGCCACACTCACTGTGCTGGAGACTCCATCATTCCAGCGCCCACTAGAGGATCGCACAGTAGCACGTGGTGAGACTGCCGTTCTTCAGTGCATAGCCCGTGGTAGCCCCGCCCCCCGCCTCAATTGGACAAAAGATGACGGCCCATTGCTGCTAACGGAGCGTCACTTTTTTgcagcagccaatcagctgCTTATTATTGTGGATGCCAGGTCTGCAGATGCAGGGAAATACACCTGCATAATGTCCAACACGCTGGGCACAGAGCGAGGACACATCTACCTCAGCGTCTCATCCTCTCCCAACTGCGAGCAGGCTGGCGGTGGCTACGACCCTGACGGCTGGACTACAGTGGGCATTGTGGTGATggtagttgtgtgttgtgtggtggGCACGTCGCTGGTTTGGGTGATAGTCATCTACCACATGAGACGCAAGAGTGAGGACTACAGTATCACTAACACAGatgaGATGAACCTGCCAGCGGACATCCCCAGTTACCTGTCATCCCAGGGCACGCTGTCTGAGCCTCAGGAAGGCTACAGCAACTCTGAGGCAGGCAGTCATCAGCAGCTCATGCCCTCCCTGACTAATGGCTATGCTCATAAAGGAACTGATGgtgtgtgttatggtgAAGTGGGAGGAGAGATGGACCCAGAGACCAGTGGGATGCTGGGTAATCATGTTGGGTCCCTGTTTGCTGGGCGCAGCAGCTTCCATCCGGGCGAGCCAAGGGACAGTCTGGCACATATGTCCAATgGTGGCACCGCCCCATTGGTCATCTGCTCAGACTGTTATGACAACGCCAACATCTACTCTCGCACACGGGACTACTGCCACTACTCATATCTGAGTGAAGAAGATGCTCTGGATACACAGCTGCCCAGAGACACAATCAGAGAGGGGCAGCACGAGGATGCAGCGCTGCATGACTTGATCACCCGGGACTCTCAGGAGCCCCAACACCATGCCTTACACCACTATAGTAGTAAAgATGTTCCAAGCAGATCGTTTTGGAGTGGAGTAGACCCTCATTCTTCTGAGTTGCCCCCAGGGTCAGTGACTGTACACAAGCCACCCACAGGTCCCTCTTATGGGAACGACCAGGAGGAAAGAACAGGAGGGCTAGAGGAAGCCTCGTACAGGACTAACCCTCAGGATCACAACCCTCCGAACACATAGAGCCCAACCAACACCCGGCGTTTACGCCCTGCTCAGCGTGCCCTACAATCCCACTACCTCTTCCAAGGAAGCTCATACTCTGTCAAAAAAAGAAACCCAAACTCCACTCTCTTCTGTGTTTACATTCTGTACCATCCCTTCATTGgatcctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcgtttGTTTCTTGTGAACAACCCTTTCTAGGACATAGTGGTGATCTTCTTCTCACTGATTCCATACAAACTAATCCTCTGGTTTAGGCTGAGACTCTGAATGTAATGTTTCTTGTAAAGAGTCTTGCTCACGTTGCCTTTTGtcttaaggattttttttttttttttttttttttttttttgcccttttcCCCTACTGTGGGGAACATCAGCTCCCATGTGTATGCCAAAGCATTGAGCCAGCCCTCTTTTATGCTGCCCTGGCTCTGAAGAAGTGGTGATCCTTGTCCTTGTAGGGATCCTTGTATGAATCAATCCCTGTATTGTTGAATATATGTAGGAGGACATCACTCAGGCAGTCAAATACTGTCATGGACACAAATATACATTCTGGATTACTCTTTCCTTTTGGTCACATCGAGCAGGTGATGGTGGCATGTGGGACATTTTTCCTTTATTAGAGTGTATGCAGTTCCCTTGCTTCCTGTCCAATATTATAAGATGAAGTTcctttttgtcagatttttttttttgttcacaaaGCCAGACATGTATCCCATTCcctctttgtttttaaaaaaaaaaaaggcactgtATCTGATAGAAGATGTAGAACATTTGCAATGTTGACAATCGAGCTACAAGCAGTCTTACAGGGTCCTCCATGTGCATAGAGTCCAtggccacatttttttttttttttttttttttaaaacaaacccaAATACAGTGCAttcctgtattttatttatttatttttattttactattctTATGTGTTCTTGTAGCTGTTGCCATGGCTCTCCCCTGAAGccatttctcttcattttgtAGAATCTGAAGGACTCGCAAATAAGAGCCACTGTACtgttaaatatatgtatgaGCACTGTATACATGGTGCCGATAATTTAGACCTTCCTCCCATGCATTTTAAAGCCTATAGGgcactaagtgtgtgtgtatcagacactGTTTAGTGCGCCATCTAATTCTGAACTTCATTTGTACAATTGGCCTTGAGCTGATTATCAGATTGCATATATATCTGTAACACAGATTTCATTAGTTTTTAACAGTGTGATACTGTTTAAAATGGCCACTTTGTAGCACCACTTACACATCTGAGTTAGTAACAGAATCAGATACGTCCATATCAGTGACGTTGTCAGTATTAATATCATTCTCACCATGGTGACCGCTGAAATTAAAGGTCACTTGATTGGCATTTGAAGTAAAAAGCCAGTGCTTATGAGTTCTCGCTCTAGTTGAGTTAACTGGCCTCATCCAGTTTTTGATATTTTGTTTGGACTGTTATTCCTCACATTGCTGAATTGCGTATGTTTCAGATTTTGGTGTGTAAAATCTACGTCTTTAAATGAACAGTGCTGTAGTGGGGGATACTTCTTTATTCAGCTTACAGAGATATTGCACCATGAAATAAGCTGTATGTTTGGGCCATAAACAGAATGATTCCTCTCCCTACGCTAGATTTTGTCCTGATCATTAGCACTTTCTGCCTGTAGTACGTAGATTGATGTTCATTACAGTATATgtcacattctttctttttgcctGTGATTGTCCGATTTCACCCACACTCGGTCTGTCAACACCTATACAATCCTATAAATGCTGCACATCCCTTAGAAGGATAATTTGTtccaaagagtgtgtgtgtgtgtgttactgagtgTGAGGGAGTGAAAGACAAAACTGAGGTACTCTAACATGTAattgtaaaatgtgtgtattgtaaaATGCACTGCAGCATTATGTCACTACAGCCAGATACAGTATGTATCAATtatgtgttatatttatttgaaGTGAATATGCTATTGCTCAGTTGTTTGCTGATAAGTGTCTGCTGGTGCCACATTTTCACATAGTTTGaaacagttttaattttttggaTATAATCTCAATTTAATGAACATATGTTgatgttttgcttttgtttcagCATGCTGTCTTGATTTCCAGCTGTTTTATGATTTGCACATGATCCTTCATTCCACTTTACGAATCAGACCCGTGTCTGAGAGCAGACCCGTGTTGTTATCCAATTCTAACAGTAGCAGCAGGTGTGTGCTGCCAGAGgtttatggtgaagttttccaggTATTAGCCATAAATAAATAGCCATAGAGCATACCACTGCAATTACTTGCACACTTTTGCTGTCAGAAATTTAAGGCAAAGTAAATTCACTGTCCTATATGGAAGATGTCTAATGGTACAGCTATAATGGATTTTACTGagcaattataaaaaaatttttttcttaataggTATGGTCTGAGAATTTGAGTTGAAGGGTACAAATGTAAGTGAAAAGTCTGAATTCGGTTCACAATTACATCTGCCAATATGTCTTTCTGAATTTAAACCAAAGTTCAACATTAATGCTTTGACACTATTCCAGTGCTGctttaatgtattttctttctattttttctatAGTGTACCTGTACATTCTGTAAAGCATGTATAAAGaactttttgttttcatgttgcatattaaacaataaaatgcaaattctGACATACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31148 lncRNA downstream 103879 12801007 ~ 12801233 (-) True G26387
TU31146 lncRNA downstream 110673 12794238 ~ 12794439 (-) True G26385
TU30865 lncRNA downstream 339052 12563790 ~ 12566060 (-) True G26137
TU30866 lncRNA downstream 343869 12561032 ~ 12561243 (-) True G26138
TU30861 lncRNA downstream 346951 12557600 ~ 12558161 (-) True G26134
TU31363 lncRNA upstream 146608 13070595 ~ 13070823 (-) True G26570
TU31379 lncRNA upstream 180470 13104457 ~ 13106086 (-) True G26585
TU31418 lncRNA upstream 245266 13169253 ~ 13169662 (-) True G26610
TU31421 lncRNA upstream 251090 13175077 ~ 13176159 (-) True G26613
TU31647 lncRNA upstream 569525 13493512 ~ 13495861 (-) False slc5a8l
XM_026913537.2 mRNA downstream 3088 12789724 ~ 12902024 (-) False LOC113526469
XM_026913546.2 mRNA downstream 3088 12789724 ~ 12902024 (-) False LOC113526469
XM_026913528.2 mRNA downstream 3088 12789724 ~ 12902024 (-) True LOC113526469
XM_026913553.2 mRNA downstream 3088 12792692 ~ 12902024 (-) False LOC113526469
XM_034297751.1 mRNA downstream 128155 12765448 ~ 12776957 (-) True im:7151449
XM_034310908.1 mRNA upstream 25698 12949685 ~ 13031045 (-) False si:dkey-166d12.2
XM_034310911.1 mRNA upstream 25698 12949685 ~ 12991939 (-) False si:dkey-166d12.2
XM_026925698.2 mRNA upstream 25698 12949685 ~ 12990191 (-) False si:dkey-166d12.2
XM_026925691.2 mRNA upstream 25698 12949685 ~ 12986160 (-) True si:dkey-166d12.2
XM_034310887.1 mRNA upstream 25698 12949685 ~ 12981893 (-) False si:dkey-166d12.2
TU29342 other downstream 2414817 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3036834 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3186142 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 3463302 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 4420998 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 314717 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 574618 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 708275 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 949727 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 1126414 14050401 ~ 14058445 (-) True G27107

Expression Profile