RNA id: XM_026920652.2


Basic Information

Item Value
RNA id XM_026920652.2
length 1549
RNA type mRNA
GC content 0.46
exon number 9
gene id wdr82
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15778190 ~ 15784244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGCGCCTTGCCACCTACCTCACGCTCAGACCACTTCCGGTACCGAGTTCACAGGCTTGTACGGCGGGCTTTTATTTAGATTATGAAATATATAGGTTAGGGCGCTTTATTTTCTCCAGAACGTAACCGGGCAGTAGTTGTAAATAAATCCCAAACAGGCGCTGGTCTGTTGGCGTTGGTGGTGAGAGGAAAGCCTGCGCCTGGCCAGGCATAAAGCGAGCGCGGCATCATGAAGCTAACAGACAATGTGCTGCGGAGTTTCAGGGTCGCGAAGGTTTTCCGAGAGAATTCGGACAAAATCAACTGCTTTGACTTCAGTTCAAATGGCGAGACGGTGATATCGAGTAGCGACGACGACTCTATCGTCTTATATGACTGCCAGGAGGGGAAACCCAAGCGAACTCTCTACAGTAAAAAGTATGGCGTGGACCTCATCAGATACACACACGCCGCCAATACAGTCGTCTACAGCTCCAACAAGATTGATGATACTATACGGTACTTGTCTCTTCATGACAATAAGTACATTCGTTATTTTCCTGGGCACAACAAGAGGGTTGTTGCTCTGTCCATGTCTCCTGTTGATGACACATTCATCTCTGGCTCCTTGGATAAAACAATCCGGCTATGGGATCTTCGCTCTCCCAATTGTCAGGGTCTAATGCATCTGCAGGGGAAGCCAGTGTGTTCGTTTGATCCTGAGGGTCTTATATTTGCTGCAGGAGTCAATTCAGAGATGGTCAAACTCTACGACTTGCGCTCATTTGACAAAGGCCCGTTTGCTACATTTAAGCTGCAGTATGAGCGTTCATGTGAGTGGACCGGCCTCAAGTTCAGCAACGATGGCAAACTCATCCTGATCTCCAGCAACGGTGGAACACTCAGGCTGCTCGACGCTTTCAAAGGGGCTGTGCTACATTCATTTGCGGGCTACAACAACAGTAAAGGTGTGGTTCTGGAAGCCTCCTTCACCCCAGACTCTCAGTTTGTCATGATAGGTTCGGAGGATGGGAAAATCCATGTATGGAATGCTGAGAGTGGAATGAAAGTAGCAGTGTTGGATGGGAAGCACACAGGGCCTGTCACCTGCCTGCAGTTTAACCCAAAATTCATGACCTTTGCCAGCGCCTGTTCTAACATGGCATTCTGGCTACCAACAATCGATGACTGATGAAGCTGTGCATTAAACAAGAATTTGAATTTGACGGGTTGTTGTGATCCAGCAGATGGCAGCGTTTACATTGCCTCTGGATCTCTGGGACTGCTTTTTGTGGACTGTAAATAGGCTGACCATGAGGCCATGTtctaatttctttttcattttatacctGTATCATTAAATCATGTTCTTTTGTAAAGTGGTTTTTCTGTGATGTGCGTTCATTTATGATGCTCTTGTTTGCCCTCAGAAAAGGTCTTGAGTTAGTTTAGCATTTTGATTTATGTCAGAAATGAGTGCCACCTGAATATGTAGTTCATGCAGTCTGAAGAACTGTCTGTGGGACATGTGctcaataaatatttatctaGTTTAATGGTGAAAATGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K14962 WDR82, SWD2, CPS35; COMPASS component SWD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33217 lncRNA downstream 52734 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 96146 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 161442 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 274147 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 300182 15477790 ~ 15478008 (-) True G27935
TU33234 lncRNA upstream 2609 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 144797 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 251589 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 253739 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 338485 16122729 ~ 16122949 (-) True G28278
XM_026920628.2 mRNA downstream 2312 15762536 ~ 15775878 (-) False LOC113530515
XM_026920619.2 mRNA downstream 2313 15762536 ~ 15775877 (-) True LOC113530515
XM_026920638.2 mRNA downstream 4664 15762536 ~ 15773526 (-) False LOC113530515
XM_026929869.2 mRNA downstream 21849 15752213 ~ 15756341 (-) True cish
XM_026919148.2 mRNA downstream 51076 15618351 ~ 15727114 (-) False srgap3
XM_026942966.2 mRNA upstream 7324 15791568 ~ 15794776 (-) True cplane2
XM_026931527.2 mRNA upstream 11557 15795801 ~ 15874718 (-) False cadpsb
XM_026931563.2 mRNA upstream 11557 15795801 ~ 15874718 (-) False cadpsb
XM_026931545.2 mRNA upstream 11557 15795801 ~ 15874718 (-) False cadpsb
XM_034311618.1 mRNA upstream 11557 15795801 ~ 15874718 (-) False cadpsb
TU32920 other downstream 308961 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 317189 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 479171 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 902200 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1488711 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1729468 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2164913 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2286743 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2792980 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile