RNA id: XM_026933128.2


Basic Information

Item Value
RNA id XM_026933128.2
length 1678
RNA type mRNA
GC content 0.55
exon number 8
gene id serbp1a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23554250 ~ 23560790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAGAGAAGCGAAGGTCCTTTCTAGCCATCTTGTGGCATCTAGCAGCGAGAAGTTCGCACCAAGCCTCGTAGAATCGGAGGAGAATCCTGCTGAAGGGGCGCCATCATGCCCGGACATCTGCAAGAAGGCTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGATGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGCCGAGACCAAGAAGAAGGACGCGGCCGCTCCGGGGGCCGCCAAGACCGCGGCGCAGGCTGCCAAACAGCCCAAGAAGGAGTCGCAGAAGGACAGGAAAGTCCCTCTTCCCGAGAAGAAGGAAGAGACCACGACGCCTGTTCCTCTCAAGAAGGAGGgcATGAGGAGGATGGGCCGGCGGCCAGAGCAGCAGCAGGCTCAGCAGGGCTCTCAGCAGCAAccgcagcaacaacagcagcagcagcagcagcagcagccgcaGGGGGGTCAGGGCGAGGGTCGCCCCCAGGCAGAAAGACGCACTGAGAGAAGGCCTCCACGCGAGCGCAGATCAGATAAACCCTCTGAGGACAAGCCAGCCGAGGGTGGAGAGTTCTCTGTGGACAAGTCTGTTGGTGAGCGGCCGTTCCGAGGCCGTGGCGGCGGCAGAGGAGCCCGTGGAGGTCGAGGCAGAGGCATGGGCCGCAGTGACGGATTTGACTCGCGTGGCAAACGTGAATTCGACAGACACAGTGGCAGTGACCGGTCCCTTAAACCAGAAGAGaagcgaggaggaggaggatctCATAACTGGGGCACTGTCAAGGACGAACTGAGTGAGCTTGACCAGTCAAATGTCACAGAGGAGACCCCTGAGGGAGAGGAGCACCCGCCCGCTGACTCTGAGAACAAGGAGAATGAGGTTGAGGAGGTGAAAGAGGAAGGGCCTAAGGAGATGACCCTGGATGAATGGAAAGCCcagcaggacaaagaaagaactAAGGTTGAGTTCAACCTTCGCAAGGCCAACGAGGGAACTGACTGGAAGAAAGGATACCTGCTGCACAAATCCAAGCCCAAGGATGCTCCATTAGATGATGCTGCTGGTGATCACCACTTCCGCAAGCCTGCCAATGACATCACGTCCCAGCTGGAGATTAACTTTGGAGACCTGGGCCGCCCTGGACGTGGCCGCGGAGGACCCCGTGGAGGAAGAGGAGCCCGTGGGGGCGGACCTACCAGACCGCCCCGTGAGCGCAGGCCTGATAAGTTGAGCGGAGGATCTGCCCCCAATGTGGACGACCCGGAGGCTTTTCCAGCTCTGGCTTAAGCTTCCTGACGGGTAGCTCTGATCAGCCTGCCACTGAGCCCTGCTTCCCCGGGCCCTTCGCTACGAGGCTTGCATGCTAATGGATCCTTCAGCAGATGATATGATGGAAGACTGTCATCCATCCCACTCACCTCTTGTGGACTGAATTTTACTTGTTttagaaaaaaggagaaaatcttacaaaaaaaaaaaaatttgaaaggACTTCTTGCTACTCAGAAGCAAATTATCGGTAGAGGTTTTGTATTCAGAAATAAAGTAGCAGGGATGTTttcatacagtatttttttttccccagacattATGCATTCTCAACGAATACCTTTTTTGTACTGCTGCTTGCATATATGCATTTCCAAATATACGTGTGAGGGGTGTGTTA

Function

GO:

id name namespace
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38121 lncRNA downstream 328861 23225082 ~ 23225389 (-) False dmrt2b
TU38041 lncRNA downstream 511488 23042531 ~ 23042762 (-) True G32244
XR_003403825.2 lncRNA downstream 559061 22990447 ~ 22995189 (-) True LOC113538262
TU37952 lncRNA downstream 768560 22711213 ~ 22785690 (-) True G32157
TU37680 lncRNA downstream 969060 22582348 ~ 22585190 (-) False gpbp1l1
TU38487 lncRNA upstream 117993 23678782 ~ 23683686 (-) True G32629
TU38557 lncRNA upstream 459336 24020125 ~ 24020779 (-) True G32686
TU38651 lncRNA upstream 657704 24218493 ~ 24218937 (-) True G32777
TU38655 lncRNA upstream 698517 24259306 ~ 24259855 (-) True G32781
TU38717 lncRNA upstream 921874 24482663 ~ 24482990 (-) True G32840
XM_034300081.1 mRNA downstream 50806 23496656 ~ 23503444 (-) False LOC113538489
XM_026933600.2 mRNA downstream 50806 23496656 ~ 23503444 (-) True LOC113538489
XM_026933637.2 mRNA downstream 58759 23480023 ~ 23495491 (-) True slc35d1a
XM_026933652.2 mRNA downstream 77044 23467381 ~ 23477206 (-) False mier1a
XM_026933473.2 mRNA upstream 3575 23564364 ~ 23572331 (-) False hsd17b7
XM_026933474.2 mRNA upstream 6586 23567375 ~ 23573359 (-) True hsd17b7
XM_026933562.2 mRNA upstream 12705 23573494 ~ 23612041 (-) False ddr2a
XM_026933561.2 mRNA upstream 12705 23573494 ~ 23612040 (-) True ddr2a
XM_026933602.2 mRNA upstream 54665 23615454 ~ 23632012 (-) False uap1
XR_004580163.1 other downstream 2022822 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 55368 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 2339941 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 2520360 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 3070040 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 3079044 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile