RNA id: XM_026933561.2


Basic Information

Item Value
RNA id XM_026933561.2
length 4082
RNA type mRNA
GC content 0.44
exon number 17
gene id ddr2a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23573494 ~ 23612041 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctccagaGTTGTCTTACATCAGCTCAGTGTGCCTGGATATGAGGTCTAAGTGAGTACAGAGAGAAAGGAACAGCCTGGATTTTACTTTGGTTTTCTTTCTCACTGGTTGGAATTAACATCTCACTGGACAAATGGTTTAAAAGAAGCAGGATTCATATAGAATGAAGGCCAGGTCTCGATTTGAGATGAACCACCTTTGGAAGATCATCTTTCCCCTATCACTTCTTCTGTACCTCTCAGGGAATGTAAAGTCCCAAGTAAATCCAAGTGTGTGTCGATCCCCTCTAGGGATGTCTGGAAGGCAGATCTTAGATGAAGACATTTCAGCTTCAAGTCAGTGGTCTGAGTCCACAGCAGCAAAATATGGCAGACTGGATTCAGAGGAAGGGGATGGTGCGTGGTGTCCAGAGAGCACGATTGAACCAGAGAACATGAATGAGTTCTTGCAGATTGACCTTCGCTCTCTGCACTTCATCACCCTGGTGGGCACTCAGGGGCGACACGCGGGAGGCATTGGGAATGAGTTTGCCCAGACCTACAAGATCAAGTACAGTCGCGATGGCAGCCGCTGGATCTCCTGGCGCAACCGGCAAGGAAAGGAGGTAATTGAGGGTAACAGGAATGCCTATGACATTGTGCTCAAGGACCTGGAGCCGCCCATCATTGCACGCTTTGTGCGCTTCATGCCTGTCATCGACCACtccatgaatgtgtgtatgcgtgtagaGCTCTATGGCTGCGAGTGGCTAGATGGCCTGGTGTCGTACAATGCTCCGCTTGGCCAGGAGATGATCCTCCATGATCAGGAGGTTTACCTCAATGACTCTGTGTATGACGGTGCCATACTTTACAGtatGACAGAAGGTTTGGGCCAGTTGACGGATGGTATGTGTGGTCTGGACGATTTTACTCTCAGTCATGTCTACAATGTGTGGCCTGGCTATGACTATGTGGGCTGGACCAACGAGAGCTTCCCCAATGGATATGTAGAGATCATGTTTGAGTTCGACCGAACACGCAACTTCACCACTATGAAGGTGCACTGCAACAACATGTTCTCTCAGAGAGTGAAGGTCTTCCAGAAGGTGGTGTGTTATTTCCGCTCAGACTTGGACTGGGAGCCAACACCTGTGTCTTTTAGTCCTGTGATGGACGACGTCAACCCCAGTGCTCGCTTTGTTACCGTCTCCCTCCAAAACCACATGGCTAGTGCCATCAAGTGTCAGTATTACTTCTCTGACATGTGGATGATGTTCAGTGAGATCACCTTTCAGTCAGATACAGCGATGTACAACACAACTTTAGCTCCCCGCAAGACCGGCGCTCCACCCAACACCCAACCAGGGGATAACCCCGTTCACAAAGTAGACGACAGCAACACTCgaattctgattggctgtttggtggccatcatcttcatcttggTGGCCATCATCGTCATCATACTCTGGAGACAAGTCTGGCAGAAGGTGCTGGAGAAGGTCTCTCGGAGGATGCTTGATGATGAGCTAACTGCTAGTCTGTCAATCCAGAGTGAGGCCTTCAGCTGTAACAACAACCTGACCTCATCAGCACCCAGCGAGCAGGAGTCCAGCTCCACCTATGAGCGCATCTTCCCGCTCGGAGCAGATTACCAAGAGCCCTCACGCCTTGTCCGCAAGCTGCCCGATGTCTCCCAGGTCTCAGAGGACACTGcaTCCAAGTCCCCTCAGTCCAGCACTCAAGAAGGAGTTCCCCATTACGCTGAGGCTGACATCGTTAATCTGCAAGGAGTAACAGGAGGAAACACCTACGCTGTGCCGGCTGTCACTATGGACCTGCTGTCAGGAAAGGACATCCCTATAGAAGAATTTCCCCGAAAACTGCTCACGTTTAAGGAGAAGCTTGGAGAGGGCCAGTTCGGAGAGGTGCATCTTTGTGAAGCAGAAGACATGGAGGAGTTCATGGATAAAGACTTCTCATTTGATGTCAGTGAGAATCAAACAGTACTTGTGGCTGTAAAAATGTTACGAGCTGATGCAAATAAAAACGCCAGAAATGACTTTTtgaaagagataaaaataatGTCGCGGTTGAAAGATCCCAACATCATCCGGCTACTGGGGGTGTGTATGAGCTCCGACCCCTTGTGTATGATCACTGAGTACATGGAGAACGGGGACCTCAACCAGTTCCTGTCCCGTCATGAACCAGAGGGCATGATCGCCCTTCTCAGCAACGCACCGACAGTCAGTTACAGTAACCTGCAGCACATGGCCACCCAGATCGCCTCAGGCATGAAGTACCTCTCATCACTGAACTTTGTGCACCGAGACCTCGCCACCAGGAACTGCCTGGTGGGCAAGAACTACACCATTAAGATCGCTGACTTTGGCATGAGCAGGAACCTGTACAGCGGAGATTACTATCGCATCCAGGGCCGCGCTGTGCTGCCCATCCGCTGGATGTCCTGGGAGAGCATCCTCCTGGGTAAATTTACCACCGCTAGTGATGTTTGGGCGTTCGGAGTGACTCTCTGGGAGACACTGACATTCTGCAAGGAGCAGCCGTACTCACAGCTCTCCGATGAGCAGGTCATCGAGAACACGGGCGAGTTCTTCCGGGACCAGAGGCGACAGATCTACTTGCCGCAGCCAGCCATGTGTCCCGACCCCATCTACAAGCTCATGTTGAGTTGCTGGCACAGGAATGCCAAAGAGAGACCGTCTTTCCAGGAGATCCATCGAGTACTGCTGGAGAATACACCTTAATGTCTGCTCCTGTGCCAAAAGCAGCACTGCAAGAGACGCTTTAGTGTGACAGCAGGCCagacaaaccacacacacacacacacagtttagaAAGGTACCCAGTTGAATAAAGCCAACAGGGAATATGTATATTGTCATATTAAATCCACCTAGGAGTGGCACAAGGCAGACGATCATGGGGCTAAAATGTAGCAGTGAGTTCAGGCACTtttgacaaagaaaaatgatttcatatttgtaatttttttttgttacttttgtttTGGCATTTGTTCATTCCTCACTcaaaaacacttaaaacaatatagtgtttaaatttaatacatttaatttaaaaataatttagggTAATTGGATAAAAAGATATGAAATAGAAATTTAATGACACAAGagcatgtttaatattttttccaatACATTAAATCAGAAGACAGCTTGAATGTAAATAAGAATTTCAGcttctttttaaattctttttaaagtcagatttgtaatttaaaaaaaatgtgtcacattaatgttcatatcagTCATCAAGAGGGCATCATGATGATTATACATAACAGCTAAAAGGCTCTTTCGTAAACTTAATAACCACTTTCAAAAAAGTGGGTAAAACCCAAGCATGCATGGActtgtaattttaaaaacatcagtgttcatatttttttgttacactttttttttagatttgttaaaTTTTGCAAATATGTGACTATTGTGTTCATATCTGTATGTATTACGCTATAGTTTTTATTCTATTTCACCTTTTGGATGACATTTAATGCTTCCATGTGTGAAGTAAAAgtagttgttattattttttacattaagtAGGATGATGATCTGTATTGTCAGATGTCAGTTTAAGGCCATTAATTTCACTTTGCTTTTTAATATTATCAATTCACCGTATAgctattccttttttattttatatgttttatattttgtatctagttatttcatgataaatatgcaaattattcttAGCAAATAATACCaaattaatgttatatatataaaaaaacataagcTATGTTTTGCTTTTATGGTAACTTGAACCTATTATATATTTGGTATAAacaatgtataaataataagtGCTTGTAAATAGCTGAAATTGAAAAAGCTGTTTGGGTAAATACTGGATTGGTAATGTGGAGATGGACGATGACGACTTTGATGGAGTTGCTACGGGATACGGGATGTGCTATGGGATGCCAAAAGCGCTGCACATGCAAAGATCAGTTTGTATACTGTATTAAATAGTGATGTTGCTTATCATCTAGATTTAGATGTAATTAATATAAAGGCTGATATAAAATGGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05125 DDR2, TKT, CD167b; discoidin domain receptor family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38121 lncRNA downstream 348105 23225082 ~ 23225389 (-) False dmrt2b
TU38041 lncRNA downstream 530732 23042531 ~ 23042762 (-) True G32244
XR_003403825.2 lncRNA downstream 578305 22990447 ~ 22995189 (-) True LOC113538262
TU37952 lncRNA downstream 787804 22711213 ~ 22785690 (-) True G32157
TU37680 lncRNA downstream 988304 22582348 ~ 22585190 (-) False gpbp1l1
TU38487 lncRNA upstream 66742 23678782 ~ 23683686 (-) True G32629
TU38557 lncRNA upstream 408085 24020125 ~ 24020779 (-) True G32686
TU38651 lncRNA upstream 606453 24218493 ~ 24218937 (-) True G32777
TU38655 lncRNA upstream 647266 24259306 ~ 24259855 (-) True G32781
TU38717 lncRNA upstream 870623 24482663 ~ 24482990 (-) True G32840
XM_026933474.2 mRNA downstream 135 23567375 ~ 23573359 (-) True hsd17b7
XM_026933473.2 mRNA downstream 1163 23564364 ~ 23572331 (-) False hsd17b7
XM_026933127.2 mRNA downstream 12704 23554250 ~ 23560790 (-) True serbp1a
XM_026933128.2 mRNA downstream 12705 23554250 ~ 23560789 (-) False serbp1a
XM_026933600.2 mRNA downstream 70050 23496656 ~ 23503444 (-) True LOC113538489
XM_026933602.2 mRNA upstream 3414 23615454 ~ 23632012 (-) False uap1
XM_026933601.2 mRNA upstream 3414 23615454 ~ 23632012 (-) True uap1
XM_026933216.2 mRNA upstream 58978 23671018 ~ 23802059 (-) False nos1apa
XM_026933217.2 mRNA upstream 71791 23683831 ~ 23802064 (-) True nos1apa
XM_026933524.2 mRNA upstream 239974 23852014 ~ 23866617 (-) True rgs5a
XR_004580163.1 other downstream 2042066 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 4117 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 2288690 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 2469109 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 3018789 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 3027793 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile