Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580178.1 |
| length | 1059 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 6 |
| gene id | LOC117599875 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 14063956 ~ 14099689 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU31990 | lncRNA | downstream | 35072 | 14027302 ~ 14028884 (-) | True | G27105 |
| TU31924 | lncRNA | downstream | 227474 | 13835830 ~ 13836482 (-) | True | G27043 |
| TU31923 | lncRNA | downstream | 227607 | 13835830 ~ 13836349 (-) | False | G27043 |
| TU31888 | lncRNA | downstream | 272590 | 13788793 ~ 13791366 (-) | True | G27016 |
| TU31830 | lncRNA | downstream | 369136 | 13655472 ~ 13694820 (-) | True | G26970 |
| TU32060 | lncRNA | upstream | 57249 | 14156938 ~ 14158099 (-) | True | G27168 |
| TU32061 | lncRNA | upstream | 72983 | 14172672 ~ 14172921 (-) | True | G27169 |
| XR_004577242.1 | lncRNA | upstream | 139106 | 14238795 ~ 14251264 (-) | True | LOC117596067 |
| TU32152 | lncRNA | upstream | 255152 | 14354841 ~ 14401429 (-) | True | G27254 |
| TU32157 | lncRNA | upstream | 344937 | 14444626 ~ 14454291 (-) | True | G27259 |
| XM_034314008.1 | mRNA | downstream | 19631 | 14030764 ~ 14044325 (-) | True | cfap100 |
| XM_034311817.1 | mRNA | downstream | 156767 | 13864944 ~ 13907189 (-) | False | lhfpl4a |
| XM_026912752.2 | mRNA | downstream | 156767 | 13873714 ~ 13907189 (-) | False | lhfpl4a |
| XM_026912744.2 | mRNA | downstream | 156767 | 13873714 ~ 13907189 (-) | False | lhfpl4a |
| XM_026912736.2 | mRNA | downstream | 156767 | 13873714 ~ 13907189 (-) | True | lhfpl4a |
| XM_034309688.1 | mRNA | upstream | 30152 | 14129841 ~ 14147849 (-) | False | LOC113531636 |
| XM_026922484.2 | mRNA | upstream | 30152 | 14129841 ~ 14147847 (-) | True | LOC113531636 |
| XM_026918449.2 | mRNA | upstream | 58695 | 14158384 ~ 14172056 (-) | True | txnrd3 |
| XM_026909744.2 | mRNA | upstream | 178360 | 14278049 ~ 14457232 (-) | False | plxna1b |
| XM_034311693.1 | mRNA | upstream | 178360 | 14278049 ~ 14456646 (-) | True | plxna1b |
| TU31994 | other | downstream | 5511 | 14050401 ~ 14058445 (-) | True | G27107 |
| XR_004579719.1 | other | downstream | 156767 | 13873714 ~ 13907189 (-) | False | lhfpl4a |
| TU31814 | other | downstream | 429304 | 13632262 ~ 13634652 (-) | False | rps26l |
| TU31648 | other | downstream | 563972 | 13498605 ~ 13499984 (-) | False | slc5a8l |
| XR_003403751.2 | other | downstream | 825150 | 13238704 ~ 13238806 (-) | True | LOC113537313 |
| trnae-cuc_5 | other | upstream | 292591 | 14392280 ~ 14392351 (-) | True | trnae-cuc_5 |
| XR_003403256.2 | other | upstream | 773259 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| XR_003403257.2 | other | upstream | 773260 | 14872949 ~ 14875990 (-) | False | pxmp4 |
| TU32819 | other | upstream | 1197620 | 15297309 ~ 15299019 (-) | True | G27843 |
| TU32916 | other | upstream | 1356946 | 15456635 ~ 15461001 (-) | True | G27925 |
