RNA id: TU306264


Basic Information

Item Value
RNA id TU306264
length 291
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G258680
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21354440 ~ 21354730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTTTGACTATGTTTTTGAAGTTATTGCAGTGCTAAACTGAACTCAAGTTATTGATTCACTTATGCTCATGTTCCTAATATCAACTATCTTGTTTTTAATCGGATCTTATTCAAATGGACCGGGTCTAATGATCAGTAGAACATAACAGACACCCTGATTGTGTTTTATAATGGAGAAAAGGACGAGGTCCCACCGAGATTTGAACTCGGATCGCTGGATTCAAAGTCCAGAGTGCTAACCATTACACCATGGGACCGCCTATGAAACACACAGCATTTCACGGGTACAA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306028 lncRNA upstream 222387 21115050 ~ 21132053 (+) True G258459
TU306031 lncRNA upstream 246425 21107347 ~ 21108015 (+) True G258462
TU306054 lncRNA upstream 249339 21103714 ~ 21105101 (+) True G258483
TU306047 lncRNA upstream 260596 21093329 ~ 21093844 (+) True G258476
TU306029 lncRNA upstream 266218 21085382 ~ 21088222 (+) True G258460
TU306276 lncRNA downstream 29561 21384291 ~ 21386101 (+) True G258689
TU306345 lncRNA downstream 124502 21479232 ~ 21496565 (+) True G258753
TU306351 lncRNA downstream 145248 21499978 ~ 21510994 (+) True G258758
TU306346 lncRNA downstream 197188 21551918 ~ 21556438 (+) False G258753
XR_003403132.2 lncRNA downstream 245892 21600622 ~ 21602468 (+) True LOC113530300
XM_026921199.2 mRNA upstream 2424 21323924 ~ 21352016 (+) True calcrl2
XM_026921100.2 mRNA upstream 31217 21315381 ~ 21323223 (+) True ttc29
XM_034311684.1 mRNA upstream 31217 21315381 ~ 21323223 (+) False ttc29
XM_034311890.1 mRNA upstream 41645 21310075 ~ 21312795 (+) True LOC117599257
XM_034312205.1 mRNA upstream 66832 21275430 ~ 21287608 (+) False LOC113530283
XM_034311568.1 mRNA downstream 23399 21378129 ~ 21437863 (+) True vdra
XM_026920124.2 mRNA downstream 23399 21378129 ~ 21437863 (+) False vdra
XM_034311569.1 mRNA downstream 47513 21402243 ~ 21437863 (+) False vdra
XM_034311570.1 mRNA downstream 59168 21413898 ~ 21437863 (+) False vdra
XM_026920337.2 mRNA downstream 97538 21452268 ~ 21455848 (+) True LOC113530406
TU306101 other upstream 123569 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 447190 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 449367 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 840245 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 955726 20390809 ~ 20398714 (+) True G258096
TU306357 other downstream 183524 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 957076 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1316895 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2017017 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 2017017 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile