RNA id: TU305571


Basic Information

Item Value
RNA id TU305571
length 1720
RNA type TUCP
GC content 0.46
exon number 3
gene id G258096
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20390809 ~ 20398714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGTGGTCCTCACTCTATGAACATGAACTTTACGTTCTTGTCTCCTCTTTGGATCTCCCCATCTATCGACTGAAGAGCCTGCGTTGCTGTTGAAATGATCTTAACATCCgactttttctttcattttcggCCTTTTCGACGTGCGGCAGATGGATTTTAAAGCACAGAATCTTCCGTCTCGACTGCCTCGTCGGCAGTAATGACTGTAGCCTACAGAAGTCGCCGCCTCCTCTAGCCTTCGTTCTGCCTGCCTGTGTTATCCCCAAGAGGGGAAGCGACAGCACGGgtgactgaagtgtgtgtgctcgtgtgtgtggTTTAGGAATGGGGGTGTAAATACCACCGTCTGTCCTTTACAAGACATTTCCCCTCCTGCCTCGATCAGTTATATCGAGTCTGGCAGGGGAAAGATCACATCCGTGTCCTGCTGAGCCACCGAGCGTCATGAGAACAGAAGGAAGAGTGCGGACATTTCTCGTCTTACGGCTCCACTGTGACCCAGAACCGGATTTACGCGTCCCCTTTCTATTCGCCACAAGACAACGTTGTGTTCGGGTCAAGCCGGGGACCGTACGAGTACGGATCTAATGTGTTCCTCCAAGACAAGGAAGTGCTTCCCAGCTGCAGGCAAACTAGCATGGGAATCAACGCTCAGAGCCACGTAGCTCAGGAGTACAGCCTGGAACACGGTCGAGGCGTTGCGCAGGAGCAAAAAGGGAACCAGATCCAGATCTACCCGTGGATGCAGCGCATGAACTCGCACAGCGgagTTGGGTACGGCTCTGACAGAAGGAGAGGTCGACAGATTTACTCCCGATACCAAACCCTGGAGCTAGAAAAGGAGTTCCACTTCAATCGCTACTTGACCAGACGCAGACGGATAGAGATTGCCAATGCTCTTTGTTTAACAGAGCGCCAAATTAAAATTTGGTTCCAGAACCGCCGCATGAAGTGGAAGAAAGAGACCAACCTGACTTCGACTGTAACTGGGACAGATTCGACTGGTGCTGCCCAGGGggaagaaaaacagagcaaTCAGGAGGAGACAGAAGAAGTTAAAAACAAAGACTaatagatttgtttttatttgtaaacgCCTGTTAAACTGCAACGTAACTACCTATAAACTCTCAGAAATGCAATTATAACTGCATGGACTGTGTATTCTGCTATACCTTCACACTCATTTCCTGATCATTATCACACAAATacgtgcagagagagagagagagagagagaaagagagagagaggtggtaTGCAGAATTATGCTAATCACTCTTTGTATTAAGAATATGTTTTGCCTCATTTTAGGCAGTTTAGATGCAATATCACAGACGCTGTTGTTCGGCAACCAGTCTTAATAGTATAGTGTTCTTTATGCTTGTAAATAGTTACTCTATGAAACAAACTGTAAACTAATTGGGTCAATGGGCTTTCTCGTTGAGTTTGCAAACAAAGTACCATTACCATTCCAAATGTGAAGGAAGTGTAGTCTATGCACATGTGTTACTTTGTTCTCGTTCAATTAGCACCAACACTGGTGGGATGATCCATGCTACCTACGTTCTTATGGATTTTAATAACTTCATCCCGTCAGTGCGTGGATGTACAAAACGCCGCTGTACTGGCTAAATATTTACTGTTCAGCTAATTTCATACCAATTCAACACACACTTATAGTCATGCTTATAAAGTTGTcttaaagtgaataaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305574 lncRNA upstream 3996 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA upstream 11475 20369995 ~ 20379334 (+) False G258097
TU305179 lncRNA upstream 281583 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 281583 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 286769 20101008 ~ 20104040 (+) True G257802
TU305640 lncRNA downstream 169076 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 212827 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 264968 20663682 ~ 20680938 (+) True G258273
TU305795 lncRNA downstream 283656 20682370 ~ 20756538 (+) False G258275
XR_004579728.1 lncRNA downstream 298271 20696985 ~ 20699668 (+) True LOC117599265
XM_034311738.1 mRNA upstream 3981 20370096 ~ 20386828 (+) True hoxc8a
XM_034311739.1 mRNA upstream 3981 20370096 ~ 20386828 (+) False hoxc8a
XM_026920559.2 mRNA upstream 3981 20383180 ~ 20386828 (+) False hoxc8a
XM_026920563.2 mRNA upstream 10779 20377228 ~ 20380030 (+) True hoxc9a
XM_026920557.2 mRNA upstream 20793 20366457 ~ 20370016 (+) True hoxc10a
XM_026920561.2 mRNA downstream 982 20399696 ~ 20402543 (+) True hoxc5a
XM_034311741.1 mRNA downstream 4587 20403301 ~ 20431053 (+) False hoxc3a
XM_026920558.2 mRNA downstream 12659 20411373 ~ 20413861 (+) True hoxc4a
XM_034311742.1 mRNA downstream 16969 20415683 ~ 20431053 (+) False hoxc3a
XM_026921098.2 mRNA downstream 40540 20439254 ~ 20446982 (+) True hoxc1a
TU304946 other upstream 911914 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1357821 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1479095 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3269868 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3882429 16508025 ~ 16508380 (+) True G256046
XR_003403172.2 other downstream 111530 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 504391 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 504433 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 829606 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 1139540 21538254 ~ 21542254 (+) False LOC117599233

Expression Profile