RNA id: XM_034311816.1


Basic Information

Item Value
RNA id XM_034311816.1
length 1128
RNA type mRNA
GC content 0.46
exon number 6
gene id cltrn
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24299596 ~ 24306661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acttcactctcaGTTCAGCTAcgaccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaaaagGGAGGAAAAAGTTTGGAATAGAAGGATAATAggaaaacagaagaagagatGAAGCTGtggattatgtgtgtgttgtgtgtggctCCAGCTCTTGTGGGCAGCAAATGTGTGTCAGaTTCGCAGCGCGATGGCTATCTCGTCAGGCTCAGTATTAAAGCAGCGCTGGGAGATAATGCTTATGACTGGGACGAGAGCGAGATGTTCTTCTTCAGAGCGACGGTGGCTTTCGCCATGAGGAGCTACACCAACGATCAGACCTACAATGTCTCAAACATCTTGGTGTGTAACGAAACAGAGCGAGTGTCGTTTTGGTTCGTGGTGATATCACCGAGCGACAGCTCTCAGCTCATTCCCAAACAAACGGTGGAGAAAGCCATcagGAATTCGAGGAATCGGATCAATAACGCGTTCCTGCTGACGGATCAGACGCTGGAGTTTGTGGGAATAAACCCGACTCTGGCGGCTCCGATGCAGTACGACACACAGCCGTGGCTCATCGTGTTCGGCGTGGTGATGGGACTCGTGTGTGTCGGCATCATCGCCATGCTCTTCACCTCCTTCATCCAGAGGacacGGGCGAAGCGCAAACAGTccgaggaagaggaggaaaccggagaaagAGTGACAGGAAACGGAATAATGTGTGAGATTCTGAAGGAGAAAGACGGCTTTAACAACCGAGGATTTGCTGATGATGATCGCTTCACCAAGCTCTAAACCCTGACGGACTTTAACATTTATCAGGAATGTAATGCAAAAGTTTGAGCTAATGTTACTAGTAACAGCAGTCCGGCTTTACTCGCCTTTATTTCACactcagctccagaattattggcacccttggtaaatatGGGTAAAAAGTAAATATGGCACGATAccacttttcttttctgatactgaGACCTTGAGCATCAGTCGACTCCAAGatggttttctttaaaaacttcaCAGTTACATtcttacacacaaaaacacttccTGTACTTTACACCAATcccaacaacagaaaaaaaacagtcatgtctctttatatgtaaatgtttccagttccaaaaat

Function

GO:      GO:0070011

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308336 lncRNA upstream 128569 24170370 ~ 24171029 (+) True G260441
TU308296 lncRNA upstream 137958 24158866 ~ 24161640 (+) False G260409
TU308297 lncRNA upstream 137958 24158866 ~ 24161640 (+) True G260409
TU308326 lncRNA upstream 153259 24145990 ~ 24146339 (+) True G260434
TU308323 lncRNA upstream 158979 24135794 ~ 24140619 (+) True G260431
XR_003403195.2 lncRNA downstream 42322 24348977 ~ 24351472 (+) True LOC113530917
TU308598 lncRNA downstream 93929 24400584 ~ 24453510 (+) False rnf146
TU308545 lncRNA downstream 98389 24405044 ~ 24430691 (+) True G260592
TU308624 lncRNA downstream 170911 24477566 ~ 24479800 (+) True G260632
XR_004579724.1 lncRNA downstream 216603 24523258 ~ 24528915 (+) True LOC117599259
XM_034311699.1 mRNA upstream 111227 24166721 ~ 24188371 (+) False LOC113530931
XM_034311698.1 mRNA upstream 111227 24166722 ~ 24188371 (+) True LOC113530931
XM_034311700.1 mRNA upstream 111227 24171064 ~ 24188371 (+) False LOC113530931
XM_034311701.1 mRNA upstream 115044 24166720 ~ 24184554 (+) False LOC113530931
XM_026920900.2 mRNA upstream 168491 24091122 ~ 24131107 (+) False slc1a7b
XM_026921041.2 mRNA downstream 5571 24312226 ~ 24315467 (+) True mdp1
XM_026921357.2 mRNA downstream 141947 24448602 ~ 24453538 (+) True rnf146
XM_034311962.1 mRNA downstream 143295 24449950 ~ 24453538 (+) False rnf146
XM_026920655.2 mRNA downstream 214224 24520879 ~ 24528915 (+) True LOC113530532
XM_034311609.1 mRNA downstream 292503 24599158 ~ 24613089 (+) True LOC117599218
TU308384 other upstream 30331 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 266874 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 910284 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 915945 23371747 ~ 23383653 (+) True LOC117599309
XR_004579660.1 other downstream 318282 24624937 ~ 24634545 (+) False ddx58

Expression Profile