Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU323423 |
| length | 1036 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 4 |
| gene id | LOC113543995 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 21476087 ~ 21478880 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006030 | chitin metabolic process | biological_process |
| GO:0006032 | chitin catabolic process | biological_process |
| GO:0006040 | amino sugar metabolic process | biological_process |
| GO:0046348 | amino sugar catabolic process | biological_process |
| GO:1901071 | glucosamine-containing compound metabolic process | biological_process |
| GO:1901072 | glucosamine-containing compound catabolic process | biological_process |
| GO:0006026 | aminoglycan catabolic process | biological_process |
| GO:0019825 | oxygen binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU323409 | lncRNA | upstream | 114470 | 21359549 ~ 21361642 (+) | False | LOC113544125 |
| TU323264 | lncRNA | upstream | 485561 | 20990343 ~ 20990551 (+) | True | G272803 |
| TU323226 | lncRNA | upstream | 544529 | 20927622 ~ 20931583 (+) | True | G272770 |
| TU322887 | lncRNA | upstream | 726465 | 20749361 ~ 20749647 (+) | True | G272470 |
| TU322859 | lncRNA | upstream | 738612 | 20716511 ~ 20737500 (+) | True | G272450 |
| TU323425 | lncRNA | downstream | 1020 | 21479900 ~ 21488039 (+) | False | G272940 |
| TU323426 | lncRNA | downstream | 1020 | 21479900 ~ 21488039 (+) | True | G272940 |
| TU323428 | lncRNA | downstream | 6271 | 21485151 ~ 21492672 (+) | False | G272940 |
| XR_003404485.2 | lncRNA | downstream | 9232 | 21488112 ~ 21492076 (+) | True | LOC113544190 |
| TU323800 | lncRNA | downstream | 483784 | 21962664 ~ 21962867 (+) | True | G273248 |
| XM_026942513.2 | mRNA | upstream | 2994 | 21468412 ~ 21473118 (+) | True | LOC113543961 |
| XM_026910063.2 | mRNA | upstream | 9969 | 21462543 ~ 21466143 (+) | True | LOC113523962 |
| XM_026942860.2 | mRNA | upstream | 24039 | 21447235 ~ 21452073 (+) | True | LOC113544185 |
| XM_026942859.2 | mRNA | upstream | 26877 | 21447235 ~ 21449235 (+) | False | LOC113544185 |
| XM_026942727.2 | mRNA | upstream | 30848 | 21435902 ~ 21445264 (+) | True | prkab1a |
| XM_026942779.2 | mRNA | downstream | 443671 | 21922551 ~ 22033997 (+) | True | LOC113544129 |
| XM_034312836.1 | mRNA | downstream | 793186 | 22272066 ~ 22289033 (+) | True | ppp2r2ab |
| XM_026942658.2 | mRNA | downstream | 812201 | 22291081 ~ 22310553 (+) | True | bnip3lb |
| XM_026942647.2 | mRNA | downstream | 836414 | 22315294 ~ 22351716 (+) | True | dpysl2b |
| XM_026942648.2 | mRNA | downstream | 842209 | 22321089 ~ 22351716 (+) | False | dpysl2b |
| TU322810 | other | upstream | 933158 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 1046969 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322750 | other | upstream | 1077165 | 20398280 ~ 20398947 (+) | True | G272367 |
| trnae-cuc_36 | other | upstream | 1627286 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| XR_004579782.1 | other | upstream | 1645844 | 19825962 ~ 19830268 (+) | False | LOC117599326 |
| TU323909 | other | downstream | 890394 | 22369274 ~ 22374875 (+) | False | tmem230a |
| XR_003404475.2 | other | downstream | 1143548 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU324289 | other | downstream | 1646487 | 23125367 ~ 23129320 (+) | False | lhx6 |
| TU324492 | other | downstream | 1786573 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324491 | other | downstream | 1842691 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
