RNA id: XR_003404390.2


Basic Information

Item Value
RNA id XR_003404390.2
length 1872
RNA type misc_RNA
GC content 0.53
exon number 10
gene id c21h5orf22
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1965740 ~ 1977309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTGCACTGTGTTTCACTAATATTGTTCCGCCGTTTACTGTTAGCAACTAGCTAGCATAATCACTACAATATCTCTGGGGATTTATTTAAGACTTTAGCTCAATGAAAACACCGCCGGTGAAACGCAGTTACTCTAAACTTCCTGTGTGGATTGTAGAAGATCATCATGAGGTTGTGCAGCACATTTACCGCGCCATCGGCTCTCGGCACATCCCGATGAAGGACATTAAGATGGTTCACTTGGACTCGCACCCCGACCTGCTCATCCCCGTCAGCATGGCTGCACACGCCGTGTTTGATAAAGAGACTCTGTTCAGTGAGCTGAGCATCGAGAACTGGATCATGCCGATGGTGTACGCCGGACACGTGTCCCACGTCGCCTGGCTTCATCCGTACTGGGCTCAGCAGATCCGAGAGGGCGAGCATAagatgtgtgtggggagggaCACGTCCACAAACACTATCAGAGTCACGGGCACAGACGATTACTTCCTGAGCGACGCTCTTTACGTTCCTGCTGAGCAGCTCGAAGACGGGAAGCCCTTCCATCTCAGCGTCATCCGTGTGGATCCAGCGCACACGTCTGAGAGGAACCGGGATATCGACCAGCAGAACGCTGCGAAAAAATCTAAACTGGACCCTGACCTGAGCAGCAGTGGGTCGTGCGGTGGCGTATCTCAGCCAGCAgatggcagcagcagcacaccAGAGACGCCGAGTGCGGAGGAAGCGACCACTTCAGTCATAGGCAGCCTACTGAGTGTGCTCAAGCAGGACGATCCCTACATCCTCGATATCGACCTGGATTTCTTCTCCTGTAAGAATCCCTTCAAGGATATGTACACAGAGGAAGAGTACTCCATCCTGCAGGAGCTGTACAGTTTCGAGAGGCCGCGCGAGGATGCAGACGAGGAGacgctgtgtgagtgtgtggagagACGAACACGGCAGCTCGAGGATCTGGAGGCAGTGTTCGCTGACCTGCTGGAGGACGACAGCGAGCTCACCCTGGAGCGCTTAGCTGATAAGCctggGATGAAATCGCTGGTTAAACTCGTCTGCAGCCTGAAGAGTCGGAACGAAACCCCAGACTAcgaaatgGTCCACCAGGCAGGCCTGACCTGTGATTACTCAGAGCTTCCTCACCACGTCAGCAGTGAAGCGGAGATCCAGCAGCTGATGCTCGCTGTGCGCTTCGTCCTGCAGCCTCTGCCCAAACCCACCCTCATCACCGTGTCCAGGTCGAGTTTGGATGAATATTGTCCTCCTGATCAGGTCGACTCCATTCAGAGCAGCGTGCTGAAGATTCTGGAAACTCTTTTCGGTTCTTTAGATGTCCATAAGGAGTACGAAGAAGCTTCTGGAGAAAGCACATCTCAGTCCTCATGATGAAAATCAGCTTTAGTGCAGCTTTATGATGCACTCTGAGTGAAGCAGCATGAGtacttTGGTACATGTCCTTCACTTCCTGGATCTTGGACCTGGGTGTTTCCCTTAATGAGATGATAGAGGCCACGCCCTTctcctcctttactgggactgacaggtccagaggccatgcctccatCATTGACTGAAACCCAAAGGCCATGCCTTCTTCACTGGGGGCTGAAACCCGAATGCCATCCCCTCTTCCTCCTTCAAACGAGACTGaaaaacagaggccacaccctcTTCTTTCTTCACTGGGGGCTGAAACAAACAGGCcacaccctcctcctccttcattAGAGACTGAAAACCAGAGGCCACGCCCTCCTCCTTTTTCACTGGGGCTAAAGCAAACAGGCcacaccctcctcctccttctcctcctccttcactggaactgataAGTACAAAAGCACCGCCTTTCTCCTCTTCTACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370796 lncRNA upstream 70793 1894702 ~ 1894947 (+) True G313016
XR_004580341.1 lncRNA upstream 303547 1624563 ~ 1662193 (+) False LOC113543035
TU370724 lncRNA upstream 325014 1624563 ~ 1640726 (+) True LOC113543035
XR_004580340.1 lncRNA upstream 325099 1624563 ~ 1640641 (+) False LOC113543035
XR_003404382.2 lncRNA upstream 325932 1624563 ~ 1639808 (+) False LOC113543035
TU370833 lncRNA downstream 139015 2116324 ~ 2123434 (+) True G313052
TU371292 lncRNA downstream 697124 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 753906 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 757810 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 811933 2789242 ~ 2789496 (+) True G313494
XM_034314849.1 mRNA upstream 30111 1887750 ~ 1935629 (+) True cdh6
XM_026941232.2 mRNA upstream 30111 1902301 ~ 1935629 (+) False cdh6
XM_026940999.2 mRNA upstream 608258 1351263 ~ 1357482 (+) True cahz
XM_034314536.1 mRNA upstream 818364 1128909 ~ 1147376 (+) True paxip1
XM_026940830.2 mRNA upstream 899273 1053868 ~ 1066467 (+) True cnpy1
XM_034314865.1 mRNA downstream 6007 1983316 ~ 2018166 (+) True zgc:163121
XM_026941178.2 mRNA downstream 18302 1995611 ~ 2018166 (+) False zgc:163121
XM_026941293.2 mRNA downstream 64891 2042200 ~ 2060017 (+) False LOC113543213
XM_026941294.2 mRNA downstream 65939 2043248 ~ 2060017 (+) True LOC113543213
XM_026941278.2 mRNA downstream 92052 2069361 ~ 2116180 (+) True xkr4
TU370328 other upstream 829720 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 834057 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1127218 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 1653012 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 1772506 189539 ~ 193234 (+) True pnrc2
XR_003404395.2 other downstream 155905 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 204670 2181979 ~ 2185677 (+) True G313112
trnae-cuc_41 other downstream 516923 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 677891 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 677891 2655200 ~ 2662399 (+) False LOC117599997

Expression Profile