c21h5orf22 (c20h5orf22,LOC107714825)


Basic Information

Item Value
gene id c21h5orf22
gene name c20h5orf22,LOC107714825
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1965740 ~ 1977309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941180.2
CGGTGCACTGTGTTTCACTAATATTGTTCCGCCGTTTACTGTTAGCAACTAGCTAGCATAATCACTACAATATCTCTGGGGATTTATTTAAGACTTTAGCTCAATGAAAACACCGCCGGTGAAACGCAGTTACTCTAAACTTCCTGTGTGGATTGTAGAAGATCATCATGAGGTTGTGCAGCACATTTACCGCGCCATCGGCTCTCGGCACATCCCGATGAAGGACATTAAGATGGTTCACTTGGACTCGCACCCCGACCTGCTCATCCCCGTCAGCATGGCTGCACACGCCGTGTTTGATAAAGAGACTCTGTTCAGTGAGCTGAGCATCGAGAACTGGATCATGCCGATGGTGTACGCCGGACACGTGTCCCACGTCGCCTGGCTTCATCCGTACTGGGCTCAGCAGATCCGAGAGGGCGAGCATAagatgtgtgtggggagggaCACGTCCACAAACACTATCAGAGTCACGGGCACAGACGATTACTTCCTGAGCGACGCTCTTTACGTTCCTGCTGAGCAGCTCGAAGACGGGAAGCCCTTCCATCTCAGCGTCATCCGTGTGGATCCAGCGCACACGTCTGAGAGGAACCGGGATATCGACCAGCAGAACGCTGCGAAAAAATCTAAACTGGACCCTGACCTGAGCAGCAGTGGGTCGTGCGGTGGCGTATCTCAGCCAGCAgatggcagcagcagcacaccAGAGACGCCGAGTGCGGAGGAAGCGACCACTTCAGTCATAGGCAGCCTACTGAGTGTGCTCAAGCAGGACGATCCCTACATCCTCGATATCGACCTGGATTTCTTCTCCTGTAAGAATCCCTTCAAGGATATGTACACAGAGGAAGAGTACTCCATCCTGCAGGAGCTGTACAGTTTCGAGAGGCCGCGCGAGGATGCAGACGAGGAGacgctgtgtgagtgtgtggagagACGAACACGGCAGCTCGAGGATCTGGAGGCAGTGTTCGCTGACCTGCTGGAGGACGACAGCGAGCTCACCCTGGAGCGCTTAGCTGATAAGCctggGATGAAATCGCTGGTTAAACTCGTCTGCAGCCTGAAGAGTCGGAACGAAACCCCAGACTAcgaaatgGTCCACCAGGCAGGCCTGACCTGTGATTACTCAGAGCTTCCTCACCACGTCAGCAGTGAAGCGGAGATCCAGCAGCTGATGCTCGCTGTGCGCTTCGTCCTGCAGCCTCTGCCCAAACCCACCCTCATCACCGTGTCCAGGTCGAGTTTGGATGAATATTGTCCTCCTGATCAGGTCGACTCCATTCAGAGCAGCGTGCTGAAGATTCTGGAAACTCTTTTCGGTTCTTTAGATGTCCATAAGGAGTACGAAGAAGCTTCTGGAGAAAGCACATCTCAGTCCTCATGATGAAAATCAGCTTTAGTGCAGCTTTATGATGCACTCTGAGTGAAGCAGCATGAGtacttgtatgtgtgtatgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XR_003404390.2
CGGTGCACTGTGTTTCACTAATATTGTTCCGCCGTTTACTGTTAGCAACTAGCTAGCATAATCACTACAATATCTCTGGGGATTTATTTAAGACTTTAGCTCAATGAAAACACCGCCGGTGAAACGCAGTTACTCTAAACTTCCTGTGTGGATTGTAGAAGATCATCATGAGGTTGTGCAGCACATTTACCGCGCCATCGGCTCTCGGCACATCCCGATGAAGGACATTAAGATGGTTCACTTGGACTCGCACCCCGACCTGCTCATCCCCGTCAGCATGGCTGCACACGCCGTGTTTGATAAAGAGACTCTGTTCAGTGAGCTGAGCATCGAGAACTGGATCATGCCGATGGTGTACGCCGGACACGTGTCCCACGTCGCCTGGCTTCATCCGTACTGGGCTCAGCAGATCCGAGAGGGCGAGCATAagatgtgtgtggggagggaCACGTCCACAAACACTATCAGAGTCACGGGCACAGACGATTACTTCCTGAGCGACGCTCTTTACGTTCCTGCTGAGCAGCTCGAAGACGGGAAGCCCTTCCATCTCAGCGTCATCCGTGTGGATCCAGCGCACACGTCTGAGAGGAACCGGGATATCGACCAGCAGAACGCTGCGAAAAAATCTAAACTGGACCCTGACCTGAGCAGCAGTGGGTCGTGCGGTGGCGTATCTCAGCCAGCAgatggcagcagcagcacaccAGAGACGCCGAGTGCGGAGGAAGCGACCACTTCAGTCATAGGCAGCCTACTGAGTGTGCTCAAGCAGGACGATCCCTACATCCTCGATATCGACCTGGATTTCTTCTCCTGTAAGAATCCCTTCAAGGATATGTACACAGAGGAAGAGTACTCCATCCTGCAGGAGCTGTACAGTTTCGAGAGGCCGCGCGAGGATGCAGACGAGGAGacgctgtgtgagtgtgtggagagACGAACACGGCAGCTCGAGGATCTGGAGGCAGTGTTCGCTGACCTGCTGGAGGACGACAGCGAGCTCACCCTGGAGCGCTTAGCTGATAAGCctggGATGAAATCGCTGGTTAAACTCGTCTGCAGCCTGAAGAGTCGGAACGAAACCCCAGACTAcgaaatgGTCCACCAGGCAGGCCTGACCTGTGATTACTCAGAGCTTCCTCACCACGTCAGCAGTGAAGCGGAGATCCAGCAGCTGATGCTCGCTGTGCGCTTCGTCCTGCAGCCTCTGCCCAAACCCACCCTCATCACCGTGTCCAGGTCGAGTTTGGATGAATATTGTCCTCCTGATCAGGTCGACTCCATTCAGAGCAGCGTGCTGAAGATTCTGGAAACTCTTTTCGGTTCTTTAGATGTCCATAAGGAGTACGAAGAAGCTTCTGGAGAAAGCACATCTCAGTCCTCATGATGAAAATCAGCTTTAGTGCAGCTTTATGATGCACTCTGAGTGAAGCAGCATGAGtacttTGGTACATGTCCTTCACTTCCTGGATCTTGGACCTGGGTGTTTCCCTTAATGAGATGATAGAGGCCACGCCCTTctcctcctttactgggactgacaggtccagaggccatgcctccatCATTGACTGAAACCCAAAGGCCATGCCTTCTTCACTGGGGGCTGAAACCCGAATGCCATCCCCTCTTCCTCCTTCAAACGAGACTGaaaaacagaggccacaccctcTTCTTTCTTCACTGGGGGCTGAAACAAACAGGCcacaccctcctcctccttcattAGAGACTGAAAACCAGAGGCCACGCCCTCCTCCTTTTTCACTGGGGCTAAAGCAAACAGGCcacaccctcctcctccttctcctcctccttcactggaactgataAGTACAAAAGCACCGCCTTTCTCCTCTTCTACATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941180.2 False 1505 mRNA 0.53 9 1965740 1976354
XR_003404390.2 True 1872 misc_RNA 0.53 10 1965740 1977309

Neighbor

gene id symbol gene type direction distance location
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding upstream 30111 1887750 ~ 1935629 (+)
cahz cahz coding upstream 608258 1351263 ~ 1357482 (+)
cnpy1 cnpy1,LOC108435706 coding upstream 899273 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 953548 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 1000123 946792 ~ 965617 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 6007 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 64891 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 92052 2069361 ~ 2116180 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 169966 2147275 ~ 2168213 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding downstream 191739 2169048 ~ 2176365 (+)
G313016 NA non-coding upstream 70793 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 303547 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 443229 1522301 ~ 1522511 (+)
LOC117599969 NA non-coding upstream 595049 1363376 ~ 1370691 (+)
LOC117599954 NA non-coding upstream 861416 1089858 ~ 1104324 (+)
G313052 NA non-coding downstream 139015 2116324 ~ 2123434 (+)
G313443 NA non-coding downstream 697124 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 753906 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 757810 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 811933 2789242 ~ 2789496 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 818364 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1118723 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1248449 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 1464351 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 1646778 274822 ~ 318962 (+)
tgs1 tgs1 other downstream 155841 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 204670 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 677891 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 697972 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 912006 2889315 ~ 2889388 (+)

Expression


Co-expression Network