trnat-agu_12


Basic Information

Item Value
gene id trnat-agu_12
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2889315 ~ 2889388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_12
GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcGGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_12 True 74 tRNA 0.57 1 2889315 2889388

Neighbor

gene id symbol gene type direction distance location
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 10600 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 18059 2860285 ~ 2871256 (+)
plcd1b LOC108280636 coding upstream 54383 2808427 ~ 2834932 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding upstream 161247 2718759 ~ 2728068 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding upstream 171617 2714439 ~ 2717698 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding downstream 86258 2975646 ~ 2985302 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding downstream 125098 3014486 ~ 3019463 (+)
nrn1b LOC108280273 coding downstream 190628 3080016 ~ 3082751 (+)
sall3a sall3,LOC108435487 coding downstream 408956 3298344 ~ 3317951 (+)
atg5 atg5,LOC107697282 coding downstream 612679 3502067 ~ 3523213 (+)
G313494 NA non-coding upstream 99819 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 152727 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 153931 2735119 ~ 2735384 (+)
G313443 NA non-coding upstream 214669 2674433 ~ 2674646 (+)
G313052 NA non-coding upstream 765881 2116324 ~ 2123434 (+)
LOC113543325 NA non-coding downstream 53099 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 186661 3076049 ~ 3076370 (+)
G313796 NA non-coding downstream 409710 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 634921 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 883682 3773070 ~ 3819909 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 213467 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 226916 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 703638 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 744078 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 912006 1965740 ~ 1977309 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 534179 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1703052 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1898460 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 2012082 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 2198451 5087839 ~ 5091273 (+)

Expression


Co-expression Network