nebl (nebl,LOC107722518,LOC107718172,LOC107688530)


Basic Information

Item Value
gene id nebl
gene name nebl,LOC107722518,LOC107718172,LOC107688530
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3014486 ~ 3019463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940953.2
acatTTCCCTGTTCTTCTTCGTTCCCAAACTGACCTCCAATAATCAGCACGAGTGTGTGCGCAGTTTTAAATCCACTGCGCCACGGCTCATTTTGTGTGAACTCGgagcactttttgtttttttgcgcTAATTGAAAAGAGAAAACGATGTGACTGAAGGCTTTCACCATGAATCCTCACTGCGCGCGCTGCGGGAAAATCGTCTACGCCACTGAGAAAGTGAACTGCTTGGACAAGttctGGCACAAAGGATGCTTCCACTGTGAGGTGTGTAAAATGACCCTGAACATGAACAACTACAAAGGATACGAGAAGAAGCCTTACTGCAATTCGCACTACCCAAAGCAGACGTTCACGATCGTCGCAGACACGCCGGAGAACTTGCGACTGAGGCAGCAGAGTGAGCTGCAGAGTCAGGTGAAGTACAGGAAGGATTTTGAAGAGAGTAAGGGCCGTGGTCTCCGATTTCTTGTAGACACACCAGAAGTGCAGAGACTGAAGCAAGCCCAGGATCAGATTAGTAATGCTAAATATCATAAGGATTTTGACATGCCGGGCTTGCACGGTGTCACTCAGGGCATTAGAGGAACTTATCTGGTGCGAGCGCAGACGAGACCTGACCATCAGACGCTGCAGGGGAGCTGCGCCACACACAGAGGTGTGAATCAGTACACCATGGAGATGGATCGGAGGCCAGGAGTCATTGTGGCTCCTGTGCTTCCTGGAGCTTATTACCCAAGCAGTTATAATCAGGGACACAGCTACATGCATCAGACCAGCATGCACTCCCTCAGATCCATGCAGCTGCAGTCGCATCCAGCAACCATGAGTGTGTACAGGGCTTTGTATGACTACACGGCTCAGGACTGTGACGAGGTGTCGTTCCGGGATGGCGATCTGATCCACAACGTGCACCCCATTGATGAGGGTTGGATGTTTGGGACGGTGCAGAGGACGGGCCGCTCGGGCATGCTGCCTGCTAACTACGTGGAGGGCATCCGCTAACCTGTGCTAGCTTACTGAAGCTTTGATTAACCCTCTTCACTGCAGAATTTGTTGGGACCAAGTACATGTAAATAGACAGAAGTAGGCCTCTATTTTAGTAGCTGTTCATAGTAAGGTTTCATTTTCCTACAATGTCTAATGTTATATTAGTGAGTGCATGTTAATGGTTTTGTACTTAGGTTGAAGTACAAGGATTTAAACTTTTACTATGAAAAATAGTTTAAGTACTAAAGCAATAAGGTCTGCCTACAGACATTATAGCAGGTCTGAGTGGGCGTGCCTTTAAGATAGATGGAGAATGTGGGCAtgtctttgagtccatatatggaagtccacagaaaggaagaagaaatttattaacattgttaaatactgttttttttttattttaagttaatattaataaatgttcctGGTCTTCACTGCTAACATTAGATAATGTAACTTTTGAATTTTTAGAAAACCATTTTAGTGCAAgcataatttataaaaattcacCAAACATTTCACGGGTGTATCTTTGAGTCCATATACGGGGTTAAGGACACACCCACCGATTTGCATACagatgatttttaataaaacaggtTAAAACATGCTAAGTTTTACATTCCAGGAAGCCCAAAATACATACTTAATATAGAAACATCCATACTTTATTTAACATCTTCCTCCTTGTTTGGCTTAAtttgtgtgattaaaaaaaaatggtcagaAATGAATTTTGTAATTAAGCTTTTGTCCAAAATGATGCGATACACAAAATGTCTTTGTAGcatgtactgtatttgtagccTCTGgaatgtataaatatacagaatttGTAAATGTCAATGCACACATGGCATTAAAATGGTATTATATCAGAAA

Function

symbol description
nebl Predicted to enable actin filament binding activity. Predicted to be active in focal adhesion. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24420 LASP1; LIM and SH3 domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940953.2 True 1875 mRNA 0.42 7 3014486 3019463

Neighbor

gene id symbol gene type direction distance location
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 29184 2975646 ~ 2985302 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 135771 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 143230 2860285 ~ 2871256 (+)
plcd1b LOC108280636 coding upstream 179554 2808427 ~ 2834932 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding upstream 286418 2718759 ~ 2728068 (+)
nrn1b LOC108280273 coding downstream 60553 3080016 ~ 3082751 (+)
sall3a sall3,LOC108435487 coding downstream 278881 3298344 ~ 3317951 (+)
atg5 atg5,LOC107697282 coding downstream 482604 3502067 ~ 3523213 (+)
trnas-aga_13 NA coding downstream 605953 3625416 ~ 3625497 (+)
trnas-aga_14 NA coding downstream 606497 3625960 ~ 3626030 (+)
LOC113543325 NA non-coding upstream 69279 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 224990 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 277898 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 279102 2735119 ~ 2735384 (+)
G313443 NA non-coding upstream 339840 2674433 ~ 2674646 (+)
G313607 NA non-coding downstream 56586 3076049 ~ 3076370 (+)
G313796 NA non-coding downstream 279635 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 504846 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 753607 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 787685 3807148 ~ 3808690 (+)
trnat-agu_12 NA other upstream 125098 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 338638 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 352087 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 828809 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 869249 2133150 ~ 2145237 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 404104 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1572977 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1768385 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1882007 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 2068376 5087839 ~ 5091273 (+)

Expression


Co-expression Network