LOC113543089 (mbp)


Basic Information

Item Value
gene id LOC113543089
gene name mbp
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4901470 ~ 4958121 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372694
CGGCCGTCAGAGTCGGACGAACTTCACACCATCGAGGAGGCCGGAGGAGCCACGTCTGAAAACGCAGAGTGAAAGCAAAAAACTCGACTCGTTCACTCGCTTCTTTTGCTCTTCGCACCCAACATGGCATCTTCAGGCTCAGCGGGACAGTCCGGCTTCAGACTCGGGCGTGGGAAGAAAAACCCTGGAGTGATGGATCAGATTGGAAAAATCTTTGGAGGAGATAAGAAGCGGAAGAGCAAGGGCTCTTTCCGTGGCGCTCTCTCTGTTTCCCCTCAGAGGTCAAGTCACTCGTCTCCTCGCCGCCGCACTGGTGGCGACAATGCTGTTGTTCACTTCTTCAGATCTATCGTGTCTCCTGCTCCTAAAAAATCTAGGTGGCATTCTTTCACAGCTAAACTAGGCATGGGGGATCAGAAGGGCTCAGTGAAGGCGCAAAAAGGGCGTGCAGGAGAGGGACAGGGCACGCTGACTCGCATCTTCAAAATGGGAGGAACCAGAGCAGCATCTCCGGCCAAACGCTGAGTTCCAGCTCTTTTATTCTTCTCCATTAAACATGATGACCCTGAacggagagaaaggaaagaagaaggaagctttttttctccacttacACTTTTTTCCTGCTGGTGTCTCCTGCACTAACCTGAACAAGATCGTGCTCATCCCCTCTGTctgttcatatatttatttatgtcaatTTCTCTGTCAACTGAGTTCAGCGTGGTCAGATCCTCCTCTACCTTCCCCCAACGTGTCTGTCCTTGTCTTTTGAGAACATGAGGCACTGAGAACCTTTTGAGGAAAgctttctgattattattagaaaCTAACAGTAATCACTTTATATCACTGAGAATAAAATTATGACTGGTTTAATaagtttattattgttatattagaTTGTGACGTTACTAGCTAATTGCAAAAGTTTGATAAAGACTCAacgagctagctagctagtttagctcATTCACAGTAGCTAGGACTTTCTAGTTGCAGATTAGCTAACTTAGTATGCTAGCTGAGTATAAAAAGTCTTGCTAAGTCACATGACGACAAAAAAACTGCCTCAAAAGGTTGTAGTGTATCATTTATATTACTGAATATTGTCTTGTGCCACTGTCTTTGTCTCAGGAGTCAATGTGACTAGCGTTTAGCATTTAACAGCTTGTTTATCTGTGCACTGGATAAACTCACACGTGTTGCTTCTTCATGGCTTCATGCAGTCTCGTCTCAAACTCACTCTTCCTCACTGTCTCAGAGGATCTGACTGCAAACTGTAGAGCTAAAAAAGTGCAAAGTAACTGAAATGTCGTCTCTTGTTGATTTTCAGTCCCAGGGTTTCTAAACTGTTGTTCATGTTTAGTCACTGCATCTGCTGTCGACTTCTGACTCTCTCTCGCGCCTCTTTGGCCTTCGACTACTTCTTTTTAGAATAAAATCAACCCCCAATAAGACATGGACACAGCTAGCATAAAAAGCCATAGATATTATGCATGTGTTTGTCAGTTAGACTGCTAATGGAGTGACGGGAatcattaaaaattcaaataaaggaGACATGTATGTGTC
>TU372695
CGGCCGTCAGAGTCGGACGAACTTCACACCATCGAGGAGGCCGGAGGAGCCACGTCTGAAAACGCAGAGTGAAAGCAAAAAACTCGACTCGTTCACTCGCTTCTTTTGCTCTTCGCACCCAACATGGCATCTTCAGGCTCAGCGGGACAGTCCGGCTTCAGACTCGGGCGTGGGAAGAAAAACCCTGGAGTGATGGATCAGATTGGAAAAATCTTTGGAGGAGATAAGAAGCGGAAGAGCAAGGGCTCTTTCCGTGGCGCTCTCTCTGTTTCCCCTCAGAGGTCAAGTCACTCGTCTCCTCGCCGCCGCACTGGTGGCGACAATGCTGTTGTTCACTTCTTCAGATCTATCGTGTCTCCTGCTCCTAAAAAATCTAGGGGGGATCAGAAGGGCTCAGTGAAGGCGCAAAAAGGGCGTGCAGGAGAGGGACAGGGCACGCTGACTCGCATCTTCAAAATGGGAGGAACCAGAGCAGCATCTCCGGCCAAACGCTGAGTTCCAGCTCTTTTATTCTTCTCCATTAAACATGATGACCCTGAacggagagaaaggaaagaagaaggaagctttttttctccacttacACTTTTTTCCTGCTGGTGTCTCCTGCACTAACCTGAACAAGATCGTGCTCATCCCCTCTGTctgttcatatatttatttatgtcaatTTCTCTGTCAACTGAGTTCAGCGTGGTCAGATCCTCCTCTACCTTCCCCCAACGTGTCTGTCCTTGTCTTTTGAGAACATGAGGCACTGAGAACCTTTTGAGGAAAgctttctgattattattagaaaCTAACAGTAATCACTTTATATCACTGAGAATAAAATTATGACTGGTTTAATaagtttattattgttatattagaTTGTGACGTTACTAGCTAATTGCAAAAGTTTGATAAAGACTCAacgagctagctagctagtttagctcATTCACAGTAGCTAGGACTTTCTAGTTGCAGATTAGCTAACTTAGTATGCTAGCTGAGTATAAAAAGTCTTGCTAAGTCACATGACGACAAAAAAACTGCCTCAAAAGGTTGTAGTGTATCATTTATATTACTGAATATTGTCTTGTGCCACTGTCTTTGTCTCAGGAGTCAATGTGACTAGCGTTTAGCATTTAACAGCTTGTTTATCTGTGCACTGGATAAACTCACACGTGTTGCTTCTTCATGGCTTCATGCAGTCTCGTCTCAAACTCACTCTTCCTCACTGTCTCAGAGGATCTGACTGCAAACTGTAGAGCTAAAAAAGTGCAAAGTAACTGAAATGTCGTCTCTTGTTGATTTTCAGTCCCAGGGTTTCTAAACTGTTGTTCATGTTTAGTCACTGCATCTGCTGTCGACTTCTGACTCTCTCTCGCGCCTCTTTGGCCTTCGACTACTTCTTTTTAGAATAAAATCAACCCCCAATAAGACATGGACACAGCTAGCATAAAAAGCCATAGATATTATGCATGTGTTTGTCAGTTAGACTGCTAATGGAGTGACGGGAatcattaaaaattcaaataaaggaGACATGTATGTGTC
>TU372696
CGGCCGTCAGAGTCGGACGAACTTCACACCATCGAGGAGGCCGGAGGAGCCACGTCTGAAAACGCAGAGTGAAAGCAAAAAACTCGACTCGTTCACTCGCTTCTTTTGCTCTTCGCACCCAACATGGCATCTTCAGGCTCAGCGGGACAGTCCGGCTTCAGACTCGGGCGTGGGAAGAAAAACCCTGGAGTGATGGATCAGATTGGAAAAATCTTTGGAGGAGATAAGAAGCGGAAGAGCAAGGGGGATCAGAAGGGCTCAGTGAAGGCGCAAAAAGGGCGTGCAGGAGAGGGACAGGGCACGCTGACTCGCATCTTCAAAATGGGAGGAACCAGAGCAGCATCTCCGGCCAAACGCTGAGTTCCAGCTCTTTTATTCTTCTCCATTAAACATGATGACCCTGAacggagagaaaggaaagaagaaggaagctttttttctccacttacACTTTTTTCCTGCTGGTGTCTCCTGCACTAACCTGAACAAGATCGTGCTCATCCCCTCTGTctgttcatatatttatttatgtcaatTTCTCTGTCAACTGAGTTCAGCGTGGTCAGATCCTCCTCTACCTTCCCCCAACGTGTCTGTCCTTGTCTTTTGAGAACATGAGGCACTGAGAACCTTTTGAGGAAAgctttctgattattattagaaaCTAACAGTAATCACTTTATATCACTGAGAATAAAATTATGACTGGTTTAATaagtttattattgttatattagaTTGTGACGTTACTAGCTAATTGCAAAAGTTTGATAAAGACTCAacgagctagctagctagtttagctcATTCACAGTAGCTAGGACTTTCTAGTTGCAGATTAGCTAACTTAGTATGCTAGCTGAGTATAAAAAGTCTTGCTAAGTCACATGACGACAAAAAAACTGCCTCAAAAGGTTGTAGTGTATCATTTATATTACTGAATATTGTCTTGTGCCACTGTCTTTGTCTCAGGAGTCAATGTGACTAGCGTTTAGCATTTAACAGCTTGTTTATCTGTGCACTGGATAAACTCACACGTGTTGCTTCTTCATGGCTTCATGCAGTCTCGTCTCAAACTCACTCTTCCTCACTGTCTCAGAGGATCTGACTGCAAACTGTAGAGCTAAAAAAGTGCAAAGTAACTGAAATGTCGTCTCTTGTTGATTTTCAGTCCCAGGGTTTCTAAACTGTTGTTCATGTTTAGTCACTGCATCTGCTGTCGACTTCTGACTCTCTCTCGCGCCTCTTTGGCCTTCGACTACTTCTTTTTAGAATAAAATCAACCCCCAATAAGACATGGACACAGCTAGCATAAAAAGCCATAGATATTATGCATGTGTTTGTCAGTTAGACTGCTAATGGAGTGACGGGAatcattaaaaattcaaataaaggaGACATGTATGTGTC
>XM_026941103.2
TCACTACCTAAACCAGGAAGCAAAATACACACGGACGCGGACTGAGGAACGAGGAAAAATAACCCAGAAAGAGGAGTTAACGAGCGACTATAATCCAGCTGTGGATGTGTTTATTCAGCTAAACGCGCGCGGTTGCTGTGGGAAGTATGGGACAGCACCTGGGAAAACGTGAGCCGTCGCCTGAGTCCaagactCTGTCAGACCCAGCATCTAAAACCACAGCGGACTCCGAGTCTCAGGATGAGGTCTTTGGCATGAACGACTCGGACGTCAACCAGAACAAAAACCGTTCAAACAAAAGCGAGACGACGTCAGGCCCCGCCCCCACCGCCCCTCCCAGCACCGGACAGACCAATCAGGCTGCCGGATATTGGCCACGCCCACACTTGGTCCGCCTTTTTTCCCGTGATGCCCCGGGCCGAGAGGACAACACCTTCAAAGAGCGGCCGTCAGAGTCGGACGAACTTCACACCATCGAGGAGGCCGGAGGAGCCACGTCTGAAAACGCAGAGTGAAAGCAAAAAACTCGACTCGTTCACTCGCTTCTTTTGCTCTTCGCACCCAACATGGCATCTTCAGGCTCAGCGGGACAGTCCGGCTTCAGACTCGGGCGTGGGAAGAAAAACCCTGGAGTGATGGATCAGATTGGAAAAATCTTTGGAGGAGATAAGAAGCGGAAGAGCAAGGGCTCTTTCCGTGGCGCTCTCTCTGTTTCCCCTCAGAGGTCAAGTCACTCGTCTCCTCGCCGCCGCACTGGTGGCGACAATGCTGTTGTTCACTTCTTCAGATCTATCGTGTCTCCTGCTCCTAAAAAATCTAGGTGGCATTCTTTCACAGCTAAACTAGGCATGGGGGATCAGAAGGGCTCAGTGAAGGCGCAAAAAGGGCGTGCAGGAGAGGGACAGGGCACGCTGACTCGCATCTTCAAAATGGGAGGAACCAGAGCAGCATCTCCGGCCAAACGCTGAGTTCCAGCTCTTTTATTCTTCTCCATTAAACATGATGACCCTGAacggagagaaaggaaagaagaaggaagctttttttctccacttacACTTTTTTCCTGCTGGTGTCTCCTGCACTAACCTGAACAAGATCGTGCTCATCCCCTCTGTctgttcatatatttatttatgtcaatTTCTCTGTCAACTGAGTTCAGCGTGGTCAGATCCTCCTCTACCTTCCCCCAACGTGTCTGTCCTTGTCTTTTGAGAACATGAGGCACTGAGAACCTTTTGAGGAAAgctttctgattattattagaaaCTAACAGTAATCACTTTATATCACTGAGAATAAAATTATGACTGGTTTAATaagtttattattgttatattagaTTGTGACGTTACTAGCTAATTGCAAAAGTTTGATAAAGACTCAacgagctagctagctagtttagctcATTCACAGTAGCTAGGACTTTCTAGTTGCAGATTAGCTAACTTAGTATGCTAGCTGAGTATAAAAAGTCTTGCTAAGTCACATGACGACAAAAAAACTGCCTCAAAAGGTTGTAGTGTATCATTTATATTACTGAATATTGTCTTGTGCCACTGTCTTTGTCTCAGGAGTCAATGTGACTAGCGTTTAGCATTTAACAGCTTGTTTATCTGTGCACTGGATAAACTCACACGTGTTGCTTCTTCATGGCTTCATGCAGTCTCGTCTCAAACTCACTCTTCCTCACTGTCTCAGAGGATCTGACTGCAAACTGTAGAGCTAAAAAAGTGCAAAGTAACTGAAATGTCGTCTCTTGTTGATTTTCAGTCCCAGGGTTTCTAAACTGTTGTTCATGTTTAGTCACTGCATCTGCTGTCGACTTCTGACTCTCTCTCGCGCCTCTTTGGCCTTCGACTACTTCTTTTTAGAATAAAATCAACCCCCAATAAGACATGGACACAGCTAGCATAAAAAGCCATAGATATTATGCATGTGTTTGTCAGTTAGACTGCTAATGGAGTGACGGGAatcattaaaaattcaaataaaggaGACATGTATGTGTCA

Function

symbol description
mbp Enables calmodulin binding activity. Involved in several processes, including maintenance of blood-brain barrier; negative regulation of heterotypic cell-cell adhesion; and positive regulation of macromolecule metabolic process. Located in myelin sheath. Part of protein-containing complex. Implicated in multiple sclerosis.

GO: NA

KEGG:

id description
K17269 MBP; myelin basic protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU372694 False 1575 TUCP 0.44 6 4937048 4958120
TU372695 False 1545 TUCP 0.44 5 4937048 4958120
TU372696 False 1410 TUCP 0.43 3 4937048 4958120
XM_026941103.2 True 2019 mRNA 0.46 9 4901470 4958121

Neighbor

gene id symbol gene type direction distance location
bud23 wbscr22 coding upstream 310514 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 324822 4546135 ~ 4576648 (+)
cux1b cux1,LOC106581515,LOC105006988 coding upstream 367496 4376994 ~ 4533974 (+)
LOC113543315 LOC108280769,LOC108423999 coding upstream 550926 4315743 ~ 4350544 (+)
wdr53 wdr53 coding upstream 593418 4300799 ~ 4308052 (+)
LOC113543019 zadh2 coding downstream 74128 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 101909 5060030 ~ 5070433 (+)
LOC113543113 NA coding downstream 112497 5070618 ~ 5073139 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding downstream 163576 5121697 ~ 5191399 (+)
LOC113543161 arl14 coding downstream 238528 5196649 ~ 5197934 (+)
LOC117599956 NA non-coding upstream 8192 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 54753 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 100367 4800652 ~ 4801103 (+)
G314609 NA non-coding upstream 121325 4779938 ~ 4780145 (+)
G314404 NA non-coding upstream 373650 4517601 ~ 4527820 (+)
G314675 NA non-coding downstream 19900 4978021 ~ 4978966 (+)
G314785 NA non-coding downstream 164577 5122698 ~ 5123402 (+)
G314800 NA non-coding downstream 262525 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 365203 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 416309 5374430 ~ 5383232 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 111635 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 139375 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1412103 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 2012082 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 2225622 2675281 ~ 2675848 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 129718 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 242900 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 261424 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 382888 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 936383 5894504 ~ 5901566 (+)

Expression


Co-expression Network