si:dkeyp-97b10.3 (LOC108280535)


Basic Information

Item Value
gene id si:dkeyp-97b10.3
gene name LOC108280535
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5341009 ~ 5370897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372887
aaatagaGTCCATAGAGTGGTTACTGCTGTGCAGTCTGATGTTATTTGATCTCAGATGAGGAGAATCGCAGATCAGatttcatcacactcatcacatgtTTTTTGCAACATGTAAGCCAAAGGTGGTAGAATGTATGTCTCTATATTAGGgcttataattcattcattcattcgtcttcagtaagcgctttatccaggtcagggttgtggtgatTCTGGAGACTATACCGGGAACTCTGGGTGTGAAGCGGGAATACGGACCAGACGGGACGCCAGTTCAtcgcagggcatcatgcacacatttacacatgaactcacacctagggtcaatttagcaaagccagtccacctactggcatgtttttgggtgttgggaggaaaccggagaacccgggagaaacccacacagacacggggagaaaatgtgaaactgcacacagacagcaacccgagctcaggatctaacagggactctggagctgtaaggcagcaACGCTAAAGGCTTTTAataatatgtttgtttgtttattttttcaaagtCACTATACCAAGAATCATGGTCTCAGTGTACAGTTATTCAAGGAAACTCATTCTCAGCATCCTGACACTAGGTTAAACCAGAAAAAAGGGAACCAGAAGCACATTTAAAAGCCATTGCTGTGTTCAAAATGGTATAATTGTACTGTAGAGTAGTATGTCCTGAAATattcattatacagtacatactatTCCTCATAATAGTATACAGTATGCAAGAATTATTTTGTACACCACACAGTGATGTAGCTACCTGCTTGTCGAATTCCCTAGTGTTCTGTTCTGCCAAGAAAGCTAGCGTGAGAGCTAGCTATAAAGTAAAGAGGttttgagggaaaaaagtgAATAGCCACAACACTAATAATATTAACTATAGGACTAACAAGTTATTTAGCTGCTGTTAACAGACGCCAGTACATTAGCTACAGTACAGTTTTCAGTTACCTGCAACATGtggagaaaaacaaatcataacGTAATCATGGTGCTTGCATGTATAATTGCATCTACTGCTGCTTTCTTCACCACAGTGTTTAGCAAATAGCGCTGGCTGCATTAGTAGTACGTCATCTAGGCATCTTTAGgactattaattatttaatgctgTTTTGTATTAGATATTGCATTTGgattcagtaaataaatgcataGAATGCCATTTCGAACACAGTCCATGGCTTAGCACTGTATTACAGATGTATAATTCCCTGTAAATTTAAGACAAATACCATAGTATAGTTAagtaaaaatagtaataatcaTGGGGTGTGTTCTGGGTGTTTAGGTTCGAGCTGACGGGAAAATATGAAGCAGTCAGGGTGgttctgtaacatttttcaGAACATGAATATCCACATACACAGCAATTAGGAGGCATTAGTGGATTCAGTTTACATGCAAGGAACGAAATTGGGGGCATgctgtcattggaaaataacgaatgacagggtggtgtgaagttgattattttcctataacagcatgtcccaaagtgttttattcttatatcttatatattcatatactgCAGCAGTCCtttggaatgtctgcaaaagaGGTAACctggccaatcagattggagaattcaacagagctgagGTGGAATATTCATTAGGTATATGAATACCTAAATACCTGAAAACAGGACTCATAAACATCGCTTACGTTATAACCGGACAAACCAAAAAGCCCTCCATCCTTGATACTTTCCCGggtcggaaaagttacagctttacttctgactgtcacactgacactggagagactgcttcaaaaaaaaatgctaaaaaaaaaaaaattcagaacgTCAGAACTTCACTCTTTTTCGTTCCTTGGTGGGCTGAGTAGTGGTTAGCAAGACAAGTCTACATAAATCCTTtgactgtttaatattttaagacCATAGAATGATAAGGTTCTATCTGACAATACTGTGATTTTAAGATCTTGAGCCATAAAGGTTTGAACTTTCATAAGGTCAGTGTAGATACAACTTTTCaactttttataattttatgcatttaacaAATACTTTGCGCTAAATCATTCATGCAAACAACATATAACTCATTTGTTTGTCAAAAAAGTCAGACAGAACCTTCAAATTCAAAAGTCTGTAAAATGAAGTTTGTCATCTTTCATTAGC
>XM_026941193.2
GTATTCCTAACGTCGCGCTATGATGAAAACATCTCTGCTTTCACTCGGACTGATTCATGCGCGCGGACTGATTGTTTCTCAGTCGAggggagaaaataaataaacaaacacagatgGTGTTTTTATAGACTGTAGGTTGATCGGTGGAGAGAATAATCTGCAGTTGTGAGGTgttgtggatgagtgtgtgctCCAGCcgcggtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgttatctctgTGCAGGTGAGAGCAGGACGGCGCGCGCTCTGCTCACGctcatcttcttcctcttttataTAACAGACGTCTCGCGCACGATTCGCGTCGCACGCGCAGGTGGCTCAGATTAAAACCGgcccttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtggatGAACTATGGTGGCGAGCATGGCAAATTACGGCGACACAAAAGAAGTAGAAGACGGAAATGGAGACATTCCTGCTTCAGATCTGAAAGGCAGTCATATTGACAATGAGTACAGCAGCTCAGAAAGTGCAGAATCATCGTCAGAAGAGAGCGcagatgaagaagaggaggaggaagaggaaaatgaGGGGGATCCAGAAAATGTGGAACCATGTGCTGAAGGCGTCACTGACGGCTCACACGCAGAGACCAGAAGAGACATGAGAAATGGAGACCACGTGAAGCCATTCtgtgaaaaatgtaacattcttcagAGACCAGTCTACCAGCTTGTCACACCGAAAGAAATCTGTGAAAATCGATGGCAGTTGACACTAGAGGACGAGGGAGTGTATGAGTGCTCGGAGACAGGGCTGGTGTTTGAGGTGTCTCAGAGGGTCCGGATCCGCTACCGTATCCTTTCCTGGAGCAAGTTCAGTGCTTTCCTGAGTGACTCGTGGAAGTTTGCCGGGCCCATTTTCGATGTGGACTGTGATCCTTCCATCCTCAAGTCCATCCAGTTTCCTCATTCACTCTGCTTGGCAGATCAGGACAATGAGGTGAAATTCAGCGTCCTACATGTGAAGAACCACCAAGGCCTCATCGAGCCTTCAGTCGATCACTCACGCAGTCATATAAAGTGGAATGTGTCGTCTCTGTCTCCGGTGGGCCCGGTCGTACAGACGTGTAAGCCAGCCGAGCACCACGGTGTTGTCCAGGTCTATAAGGAAGTGGGCCAGCAGGACTCGTACTCATTCAGGGTCTACCTGGCTACCAACAATGACTCTGACATCGCTGACATTAGAAGGGAGGTAAGGACCGCAAAGAAAAAGTACATGAAGATCGAGAAGCCGCCTCAGTGCCAGAAGCTGCTGGAGGAGAACAAGAAGTACCGTCTGATCAGTGAGCCCCAGGGGGACATCACACCTGAGgACATCCAGTTCACTCTGGCTGTCGTAAAGATGAAAGGTTACTTTGAGGCGTTCTTCGAGCAGCGTCCTCCGTTCAGGCTCTCGCTAATTGAAGCAGAGTCAGAGCAAAGTGTATGGTCTGCTACCATTCGAGAAGGAGACTGTGTGGAGAATACTGTTGAACAAAACCGTAGCCGATCCTGCAgtcGGAAGCGAAACTCCAGCATGTCGGACGTGGAGCTGATCAGTAAGAGAGCTCGCTGGTGTGATGAATCAGATGGTGTGAGAACTAAAGAGGCAGACATGAGCGATAAGCAGCTGATGCAGGTGGCCAAATGCATGGGAAAGGAGTGGAAATGTGTGGCCATCGCCTACCTGGACCTGACCAAACAGGACGTGGAGGAGATTGAGATGACAACTAAGGGGAGCCCGACCATGATGAATTTCCACATGCTGGATCGCTGGAGGAGTCGGCAGCCTAAGGGAGAGGCCAGAGTCATGCAGCTCTACGAGGCACTGAACCAGGAAGATGTGCCCAGAGAGGTCATCGACAGACTGGAAGATATGCAACGCAGTGATTCCCCTAAATAAGTCCTGAACTTTTTCTTGGGTGGATGTACTTCTGGACATTCATCTCAGCTCTGCATTCTGGAGCCTTCAGCTTTAAGACTGTGTATCTCTCAGGGTCTGTCCTATTTCAgaattctttctctctttttttggaagtaattcaaaaaaatataatagGTTCATTTTGACAGCTATTTGTGGAAAGCTATTTGGTGTATATGAATGCGAAAATGCAGGCCAGTTACATTCATTCTCTTAGCAAGCTTAGGTGAAGGCGAGTAcacaataagaataataatatggTGCTGCAAATACACCATGGGAGCTGTGCTCTATAACTACTTGAGTGTATAGGTTCTATATCCCTGTGTACTTGACTGTGTACTGTTTGcgcaattttattttttcatacatttcaaTTTTCTATCATGCTTTCTTCATGTCTCCATTCCAACCACTCCAAACATTGTGCTGACTCAGAGGAATGCTTAATCATGTTTACCCATTAAGCTTTTGGAGCATTTGGACCAATTTATGTTGACTGTGTATAACATTTGGTGGGTTTTTTCCATTATGGCAGCAAAAAAAGCACTGGTAGCTTATAGAAAATttagtaacactttctatgaaggctATATGGCATTACACAAATTGTTATAAGTATTTATGACATAAGGGCATTACAGTTTGTAGCATTATTGCTTATAGCACATTATATCACCATTATATCTTCTCATAATGCAAAGTTGGGCTCAGTGATATAATGTGTTGTGAACTTATAATGCATCAATGCATCTTtcataatgtaaaataacaattcataatgtaaaataaagatatCTATAAAGTGTAGTGCATTTTCCTAAATAAGTATAACAATATGCATACTGccttataaatgcattataacatgatatgaatatTTTCGTAGTTTATAATTGATATGACCTTCACAGAAAGTTTTAccgaatttttttcttttcttttttttcatttctatgtACTGTAAATAGTATCTGTCTATTTTTTTAGGTCTGTTTATGAATTTGCTAGTGtatattttcattctttttcttattcttttttttttttaaatatgtaaaatagaGTCCATAGAGTGGTTACTGCTGTGCAGTCTGATGTTATTTGATCTCAGATGAGGAGAATCGCAGATCAGatttcatcacactcatcacatgtTTTTTGCAACATGTAAGCCAAAGGTGGTAGAATGTATGTCTCTATATTAGGgcttataattcattcattcattcgtcttcagtaagcgctttatccaggtcagggttgtggtgatTCTGGAGACTATACCGGGAACTCTGGGTGTGAAGCGGGAATACGGACCAGACGGGACGCCAGTTCAtcgcagggcatcatgcacacatttacacatgaactcacacctagggtcaatttagcaaagccagtccacctactggcatgtttttgggtgttgggaggaaaccggagaacccgggagaaacccacacagacacggggagaaaatgtgaaactgcacacagacagcaacccgagctcaggatctaacagggactctggagctgtaaggcagcaACGCTAAAGGCTTTTAataatatgtttgtttgtttattttttcaaagtCACTATACCAAGAATCATGGTCTCAGTGTACAGTTATTCAAGGAAACTCATTCTCAGCATCCTGACACTAGGTTAAACCAGAAAAAAGGGAACCAGAAGCACATTTAAAAGCCATTGCTGTGTTCAAAATGGTATAATTGTACTGTAGAGTAGTATGTCCTGAAATattcattatacagtacatactatTCCTCATAATAGTATACAGTATGCAAGAATTATTTTGTACACCACACAGTGATGTAGCTACCTGCTTGTCGAATTCCCTAGTGTTCTGTTCTGCCAAGAAAGCTAGCGTGAGAGCTAGCTATAAAGTAAAGAGGttttgagggaaaaaagtgAATAGCCACAACACTAATAATATTAACTATAGGACTAACAAGTTATTTAGCTGCTGTTAACAGACGCCAGTACATTAGCTACAGTACAGTTTTCAGTTACCTGCAACATGtggagaaaaacaaatcataacGTAATCATGGTGCTTGCATGTATAATTGCATCTACTGCTGCTTTCTTCACCACAGTGTTTAGCAAATAGCGCTGGCTGCATTAGTAGTACGTCATCTAGGCATCTTTAGgactattaattatttaatgctgTTTTGTATTAGATATTGCATTTGgattcagtaaataaatgcataGAATGCCATTTCGAACACAGTCCATGGCTTAGCACTGTATTACAGATGTATAATTCCCTGTAAATTTAAGACAAATACCATAGTATAGTTAagtaaaaatagtaataatcaTGGGGTGTGTTCTGGGTGTTTAGGTTCGAGCTGACGGGAAAATATGAAGCAGTCAGGGTGgttctgtaacatttttcaGAACATGAATATCCACATACACAGCAATTAGGAGGCATTAGTGGATTCAGTTTACATGCAAGGAACGAAATTGGGGGCATgctgtcattggaaaataacgaatgacagggtggtgtgaagttgattattttcctataacagcatgtcccaaagtgttttattcttatatcttatatattcatatactgCAGCAGTCCtttggaatgtctgcaaaagaGGTAACctggccaatcagattggagaattcaacagagctgagGTGGAATATTCATTAGGTATATGAATACCTAAATACCTGAAAACAGGACTCATAAACATCGCTTACGTTATAACCGGACAAACCAAAAAGCCCTCCATCCTTGATACTTTCCCGggtcggaaaagttacagctttacttctgactgtcacactgacactggagagactgcttcaaaaaaaaatgctaaaaaaaaaaaaattcagaacgTCAGAACTTCACTCTTTTTCGTTCCTTGGTGGGCTGAGTAGTGGTTAGCAAGACAAGTCTACATAAATCCTTtgactgtttaatattttaagacCATAGAATGATAAGGTTCTATCTGACAATACTGTGATTTTAAGATCTTGAGCCATAAAGGTTTGAACTTTCATAAGGTCAGTGTAGATACAACTTTTCaactttttataattttatgcatttaacaAATACTTTGCGCTAAATCATTCATGCAAACAACATATAACTCATTTGTTTGTCAAAAAAGTCAGACAGAACCTTCAAATTCAAAAGTCTGTAAAATGAAGTTTGTCATCTTTCATTAGCTTTTATAGTTTTTCATTTAGATATTGCTGTATCTACCATAAAACACAAATGACTGAATAAAAGTATGACTGTTAAAACATGA

Function

NR:

description
uncharacterized protein LOC110507627 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372887 False 2182 lncRNA 0.38 1 5368634 5370815
XM_026941193.2 True 5289 mRNA 0.41 16 5341009 5370897

Neighbor

gene id symbol gene type direction distance location
ift80 ift80 coding upstream 18403 5249468 ~ 5322606 (+)
trim59 trim59 coding upstream 114302 5222533 ~ 5226707 (+)
LOC113543161 arl14 coding upstream 143075 5196649 ~ 5197934 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding upstream 149610 5121697 ~ 5191399 (+)
LOC113543113 NA coding upstream 267870 5070618 ~ 5073139 (+)
lxn LOC108280775 coding downstream 345409 5716306 ~ 5723799 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding downstream 411396 5782293 ~ 5783234 (+)
dock10 dock10 coding downstream 624592 5995489 ~ 6096462 (+)
LOC113543361 NA coding downstream 735105 6106002 ~ 6108369 (+)
cul3b cul3,LOC100710156,LOC104924156 coding downstream 753714 6124611 ~ 6138401 (+)
G314807 NA non-coding upstream 17334 5323324 ~ 5323675 (+)
G314800 NA non-coding upstream 119186 5220646 ~ 5221823 (+)
G314785 NA non-coding upstream 217607 5122698 ~ 5123402 (+)
G314675 NA non-coding upstream 362043 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 447731 4884210 ~ 4893278 (+)
LOC117599958 NA non-coding downstream 3533 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 3846 5374743 ~ 5374957 (+)
G314826 NA non-coding downstream 24415 5395312 ~ 5396474 (+)
G314852 NA non-coding downstream 77556 5448453 ~ 5448652 (+)
G314868 NA non-coding downstream 105175 5476072 ~ 5476427 (+)
trnat-agu_13 NA other upstream 121391 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 124418 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 249736 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 382888 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 551174 4787848 ~ 4789835 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 523607 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 855820 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 1566443 6937340 ~ 6944990 (+)
G316001 NA other downstream 1762562 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 2211416 7582313 ~ 7598164 (+)

Expression


Co-expression Network