ift80 (ift80)


Basic Information

Item Value
gene id ift80
gene name ift80
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5249468 ~ 5322606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941016.2
GGCAGTTTACAGTGTTATCGCGAGAAAAACATCAACTCGTGAGTGGCTTTTGAAATCTCGCGAGACAAACGTCCAACCGGCGGAGTGGAATGTTAAATCTCGCGAGACAAACGCCAAACCTGTAAGTGGACTGCCTGATCTCGCGAGACAAACTATGGCGAAGTGAAGGGCCGTGTGGAGCTTGATAGCTTAGCGGTGACAAAACACAAGAGCTGGATTTGTCTCGACAGCAAAGTACAGAATGAGATTCAAAACATCTCTGCTGAAGGAGCCAAAGCATAAAGAACTGGTCAGTTGTGTGGGCTGGATCACAGCTGATGAAGTGTACTCCTGTAGTGAAGAccatcagattttaaaatggaacCTGCTCACGAACGAGACCAGTGTGGTGGTGAAGCTCCAGGAGGACATCTACCCCATCGACCTCCATTGGTTTCCCAAGACTGTAGCTGGGAAGAAACAAGCTTTGGCAGAGATCTTCGCTCTCACCAGTACCGATGGTAAGTTCCACTTGCTGTCTAAGACGGGCCGCATTGAAAAGAGCGTGGAAGCGCATCGAGGAGCCGTGCTGGCGAGTCGCTGGAACTATGATGGAACTGCCCTCATCACAGCTGGTGAGGATGGCCAAATCAAGATCTGGTCTAAAAGTGGGATGCTGAGGTCCACTTTGGCCCAACAAGGATCTCCTGTGTACTCTGTAGCTTGGGGTCCAGACTCCGACAGGATACTTTACACATTTGGCCGGCAGCTCGTCATCAAACCTCTTCAACCGAGCTCCAAATCTCTGCAGTGGAAAGCTCATGATGGCGTTATTCTAAAGGTGGACTGGAATTCTGTGAACGATTTGATTCTATCTGGAGGTGAAGACTGTAAATATAAGGTGTGGGACAGTTATGGGCGGCCTCTCTACTCGTCCTCCCCCCACGACTACCCGATCACCTCTGTGGCTTGGGCTCCTGACGGCGAGGTGTTCGCTATGGGCTCCTTCAACACCCTCCGTCTGTGTGACAAGACTGggTGGTCATATGCTCTGGAGAAGCCGAACACAGGCAGTGTGTTCAGCCTGGCCTGGTCTGCTGATGGCACTCAGTTAGCAGGAGCATGCGGGAATGGCCAGGTCATCTTCGCTCACATTGTGGAGCAGCGATGGGAGTGGAAGAACTTTGAGATCACGCTCACTAAGAGACGCACCATGCAGgTCAGGAACGTGCTGAATGATGCAGTGGACACCTTGGAGTTCAGGGATCGAGTTATCAAAGCGTCACTCTCTCATGGTCACCTGGTAGTAGCCACCGCTCTGCAGTGTTTAGTCTACAGCACTAAAAACTGGAACACACCACTGATATTTGACTTGAAGGAAGGCACAGTCAGCCTGATCCTCCAGGCTGAGAGGCATTTCCTATTGGTGGACGGAGGAGGCATCTACGTGTACTCGTATGAAGGGCGTCTGGTCTCCGCTCCCAAGTTTCCGGGCATGAGGACAGATATTCTGAACGCGCAGACCGTCTCACTGAGCAACGATACCATCGCTGTACGTGACAAGACCGATGAGAAAGTCGTCTATTTGTTTGACGCTCAAACAGGAAAGCCCATTGGTGATGGCAAGCCTTTAACCCACAAGATGGAGGTGATGGAAATTGCCCTTGACCAGTGCGGAGCCTCCAAGGACAGGAAGATCGCCTTGATTGACAAGAACAACGACCTTTATCTGACCTCTGTGCGCAGGCTGGGCAGAGAGCAGAGCATGCACAAGATTGGCTCTATGGTTCACACCATGGCCTGGAATGACTCAGCCAACATCCTGTGTGGAATCCAAGACAACCAGTTCACTGTGTGGTACTACCCCAGTGCTGTGTTTGTAGACAAGGACCTGCTACCCAACACACTCTTCACCAAGGATGCCAGTGAGTTCAGCAGTGCTCCACATATCCTGAACTACACGGGCACGCAGGTGACAGTGAGGCGAGCTGATGGCTCGTTGGTGTACAGCGGCGTGCCACCCTACCCCACCATGCTGCACGAGTACACAGCCTCCGCTCGCTGGGAGGAGGCCCTCCATCTGTGCCGCTTCGCCAAGgatCAGGCCCTGTGGGCATGTCTGGCTGGAATGGCCATGGCTAACAGAGAGCTTAACACAGCTGAGACAGCTTACGCGGCCATCAGAGAGGTGGATAAAGTGCagtatataaaatttataagaTTGCCCTCTAAGGAATCCTCCCTGGCTCATATACTACTCTTCAGTGGACAAGTACAAGAGGCTGAAGCTACATTACTACAAACAGGTCTCATATACCAGGCCATTCAGATCCACATTGACCTCTTCAACTGGGACAGAGCTCTGGAACTGGCAGTGAAGCAcaaaacccatgtggacaccGTCCTTGCTCACAGACAGAAGTTCCTGCAAGACTTTGGCAAAGAAGAAACCAACAAGCGTTTCCTGCAGTACTCTGAAGGGgtggaggTGGATTGGGAGAAGATCCAGTCCAAGATTGAGATGGAGCTAgccaaagagagagagcgagcagccAACTCTTCTGTCAGGAGCAGCGTGGCCTCTCACCGCTGAAAAACAGACATTACCCAGCAAACTCTGCAGGATCATTGTTCTCACTCTGACCTGAGATCAGACTCCTGGAGTTGGAGTACTTTGGATAAGTAAATTTTGGATCATTCAGAGTAATGCGCCAGTTATCTCTTTCCTCTTGTTGTTCGTTGGTCAGCCTTGTGTGTTCTTTTGAACATATTTATGCTTCTGTAATGTAAATAAGGATGTAATCATTAAGCACTGATCTCTTTATAAGTAAATTTTGTATGCTGTCATATTTTTAGATGAAACAAAAGGCCTTATTTAATGATGTGCAAAAgctgtttaataaatacacacatcaaa

Function

symbol description
ift80 Acts upstream of or within several processes, including cilium assembly; convergent extension; and retina morphogenesis in camera-type eye. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in several structures, including eye; notochord; pectoral fin; pectoral fin bud; and pronephric duct. Used to study asphyxiating thoracic dystrophy; asphyxiating thoracic dystrophy 2; and ciliopathy. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80).

NR:

description
intraflagellar transport protein 80 homolog

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19678 IFT80; intraflagellar transport protein 80

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941016.2 True 2896 mRNA 0.50 21 5249468 5322606

Neighbor

gene id symbol gene type direction distance location
trim59 trim59 coding upstream 22761 5222533 ~ 5226707 (+)
LOC113543161 arl14 coding upstream 51534 5196649 ~ 5197934 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding upstream 58069 5121697 ~ 5191399 (+)
LOC113543113 NA coding upstream 176329 5070618 ~ 5073139 (+)
rabgef1l LOC108280803 coding upstream 179035 5060030 ~ 5070433 (+)
lxn LOC108280775 coding downstream 393700 5716306 ~ 5723799 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding downstream 459687 5782293 ~ 5783234 (+)
dock10 dock10 coding downstream 672883 5995489 ~ 6096462 (+)
LOC113543361 NA coding downstream 783396 6106002 ~ 6108369 (+)
cul3b cul3,LOC100710156,LOC104924156 coding downstream 802005 6124611 ~ 6138401 (+)
G314800 NA non-coding upstream 27645 5220646 ~ 5221823 (+)
G314785 NA non-coding upstream 126066 5122698 ~ 5123402 (+)
G314675 NA non-coding upstream 270502 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 356190 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 402751 4846192 ~ 4846717 (+)
G314807 NA non-coding downstream 718 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 51824 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 52137 5374743 ~ 5374957 (+)
G314826 NA non-coding downstream 72706 5395312 ~ 5396474 (+)
G314852 NA non-coding downstream 125847 5448453 ~ 5448652 (+)
trnat-agu_13 NA other upstream 29850 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 32877 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 158195 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 291347 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 459633 4787848 ~ 4789835 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 18403 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 571898 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 904111 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 1614734 6937340 ~ 6944990 (+)
G316001 NA other downstream 1810853 7133459 ~ 7135501 (+)

Expression


Co-expression Network