LOC113543361


Basic Information

Item Value
gene id LOC113543361
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6106002 ~ 6108369 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941484.2
ATGGAGAGCGGCTGTGGCCTCGCACGCGTCATCCAGCAGCTGCAGGATGAAATCAGGAAGCTGGAGACGGAGAACAAGGAGTTGCGCGGGCAACTCAGCCTGCCACTCACCGAGACATCACCTACCGACTCTGAAAGGAGAGATGGAACCACAGAGAACCACTCGAACCTCAGACGGAACGTTTCGGCACCGGCGCTGGAGGGCCAGTACAAAGAAAACATGATCATGACCGTCCGGAGGTATTCCATATCCTCAAATGCAATTCACGTGCCCTGTAAGAGTGTGAGCTCGCATAAACCTCGGAGTGACAGCGACTGGGCCAGACTGCGAGGAGGAGCGCGTACGACTTCAGAGGACAGAGGCAAAACTGACGACAAACCAGCAAACCGGCGCACGTTTCAGCAATGCGTCAACAAAGCCAGCGCCAAAGAGAAGACGGTCACATTCCTGCTGCCTGTGGATGACATCTACACCAACCGGCCCTTTATGGCAGACCACCTGACTGACACGAGCTCATGCGATCTCCAGATATCAGAAACAGATTCGTGAggcaaacaaaaaagacaaacgATATGGTCTCATTTAATCCAGAGGAGCTTTATCACCCTACACTGCTGCATTTTTCAGATCACAGCGACGTTTGATTTCTACACTTGACCTCCTCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941484.2 True 667 mRNA 0.53 3 6106002 6108369

Neighbor

gene id symbol gene type direction distance location
dock10 dock10 coding upstream 9540 5995489 ~ 6096462 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding upstream 322768 5782293 ~ 5783234 (+)
lxn LOC108280775 coding upstream 382203 5716306 ~ 5723799 (+)
ift80 ift80 coding upstream 783396 5249468 ~ 5322606 (+)
trim59 trim59 coding upstream 879295 5222533 ~ 5226707 (+)
cul3b cul3,LOC100710156,LOC104924156 coding downstream 16242 6124611 ~ 6138401 (+)
LOC113543022 fam124b coding downstream 32216 6140585 ~ 6147090 (+)
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding downstream 109069 6217438 ~ 6224414 (+)
LOC113542971 LOC108280887,LOC103033590,LOC108424028 coding downstream 155259 6263628 ~ 6266410 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding downstream 158124 6266493 ~ 6267874 (+)
LOC117599998 NA non-coding upstream 363648 5741742 ~ 5742354 (+)
G314969 NA non-coding upstream 494239 5611559 ~ 5611763 (+)
G314954 NA non-coding upstream 518083 5587702 ~ 5587919 (+)
G314923 NA non-coding upstream 557810 5547889 ~ 5548192 (+)
G314915 NA non-coding upstream 572017 5533766 ~ 5533985 (+)
G315454 NA non-coding downstream 69085 6177454 ~ 6178053 (+)
G315579 LOC108280872 non-coding downstream 116390 6224759 ~ 6225767 (+)
G315580 NA non-coding downstream 117602 6225971 ~ 6226670 (+)
G315584 LOC108280690 non-coding downstream 122207 6230576 ~ 6231579 (+)
G315583 LOC108280691,LOC108424091 non-coding downstream 124232 6232601 ~ 6234263 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 204436 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 735105 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 886384 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 889411 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 1014729 5087839 ~ 5091273 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 118348 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 828971 6937340 ~ 6944990 (+)
G316001 NA other downstream 1025090 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1473944 7582313 ~ 7598164 (+)
G316413 NA other downstream 1587165 7695534 ~ 7695919 (+)

Expression


Co-expression Network