LOC113542971 (LOC108280887,LOC103033590,LOC108424028)


Basic Information

Item Value
gene id LOC113542971
gene name LOC108280887,LOC103033590,LOC108424028
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6263628 ~ 6266410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940835.2
TCAGCTCCGGCCAGTGTCGGGAGCCGGAGAGATCTAATATCGCACTTGGACACAGAGGACCTCAGTGTGCAGAACTCCAGAGAGACGATGGCTTCAGCCGGCCTGGAAATCCTGGGCATGATTCTGTCTGTGGCTGGCTGGCTGGGAGCAATGGTGGCCTGCTGCCTGCCCATGTGGCGCGTGGCGGCGTACGTGGGTCAGAACATTGTGATCACACAGGTAGTGTGGGAGGGCCTGTGGATGAGCTGTGTGGTGCAGAGTACAGGCCAGATGCATTGTCAGATCTACGATTCCATGTTAGCGCTGCCCAGTGACCTGCAGGCTGCACGAGCTCTGGTTGTCATCGCTGTGTTCATTGGCGTAGTGGCCATGACGCTGGCTGTAGCAGGCGCCAAGTGCACCAACTGTACGTCGGATGTGTCCAGCAAACCTCGCATCATGCTGGGTGCCGGTGCAGCGTTTGGCAGCAGCGGGCTGTTATTGCTTGTGGCCGTGTGCTGGTCAGCCTACACCATTGTCCTGGACTTCCATGACCCACTGCTGCAGGACACGCAGAAGAGGGAGTTCGGGAACTCATTGTACTTCGGCTGGGGCGCCTCCTGCCTGCTCATCCTAGGGGGAGCCATACTTTCCTGTTCATGTCGTTCCAGAGCACCCAAGGATCCTGTGTCTATTGGAGCACAGTACTCAACGGTGAAATCAGTGGCTGCAAATGGATATTGCAGAAGGGACTATGTTTGAATGGTGTAGGTTGGTAAATGAGCGTGCATTCAGTGAATAAAAACTGTGCTGGAATTTTATTCACTAGGAAAAACACCAGAGAGATATGATCGAATGGTTATATATGATTGAACTATGGCATAGTGTTAATTCAGTCAGCAACAGTAAGCCAATAGATGTGTTCTTTAGCCTGTAGATCTGAAATAGATGTATTAGTGTGTAATAACCTTTGTGTTACATCTAGATTTTGAGACACAATGAGAAATCTGTCTAACTGAACAATGTTGACTAAATAGGTATCCAACATGTCTAATTATGTTGCAATTCTCATTAAGTTACATTACAGGCCCTCAGAGTTTACTGGTTAAGGCTGATGGGCATTGCAAGATTTAgtaatgaaacattttctgaaGGTAATAAAGTTCTTATAACAAGTCAGACAGCACATAAATGTTTCCTGCGATATTGCAGCTTTTCGTCTACTTCTAAATGGATGACCATTCCCGGAAACCCGAGACTTTGCAAAGGTAAGCTGGATGAGCTGAAATAAGGAATTCTTAGTCCAAAGTGCTCTATATCATTTGAAATCTACCCAGCTCTTGAGGGGCTGCAGCACATTGGAAATTACCTCCCTGCATCAGTGTAGACGTGACTGGGTACAATGCAGCCGTTGTTCTGAGACCTTCTTCTGCTCCTTTGTGTCCACTGCTCAATTCTTTAATTCAGGGAAGTGTAACTGAAACTAGCCACCATGAGATGAAAGCACCTTCCTTTTTGCTTAGTTGGAGCTAAGTCTGCAAAGTCCCTGCGCTGTGGCATTCCTTTGTCTTGCTGGTAGAACATAGTTGAAGGACAAATGCAGTTTTCCAAATATTGGACTTTTTTAGTCAATACTGGGTTCAGGAAAATTACTACATTagagaaatataatttaatatttgaaaactACTATATGGAAAAGAATACATTAAAGAATGCAGAGAAATGTGATAAAGCCTAAATCACCCAAAAGAGTAATACATAATGGATTAACAGTGCCACTAACAATTATAAAGCAATCAGTTAGATGCTGCTATGCAGCAAATGTAATATATTagagcaaaatatttttaaccaaCTTTATATAAcccattgtaattttttttgtctttaagttTTCCCTGTTTGAAATAAACTCTGCAAACACACAGCTAAGTTCAAAATTTCAGGTTTGATTAGCATGGAGTTTGCTAGCTTTGAAATACTACCATTATAAGGTTAACAAGACACTCAAAGCAACAACATGGATTTGCTTCCAAATGCTCTTAAAGAGAAAATTCTTCTCATCACGGGAGTTCATTCAGTGCATGCTTCAATGATTGAACTGATCTGTCTTGCACACTCTTGGATTTGAGCCAGGCTTTTGAAACTTATATTGGTATATGAAAGAATTCAATTAGTTTAATAAGAACCTAAAAATAGGCTGTAGCATACCATGCAAAACCACGCAATATCCCCAACTAAGACCCTTTTGagctgtaaacaaaaaaaaaatacccactTACCCCAGCAACACAGTGATGTGGCTGAAATAAACTAGTTTCTTTGTGTTCTGTTTTCCTAAATAAATGACAGGAGAAATGACTCCAGTTTCAGCAAGGTCTTATCTGTACCGTTTTACTGTTTACTTAACGTTTCAACGGAAATTATTGGTTGTTCTGTCAAGGAAATTTGTCATTCAGGGAGTTTCCGTTAGAGTCAAGTGTCAACAATTAATAACCGACTACCGCCGAGCAAATACCTTTATATGGCAGTGTTATGTGGCTTTGCTCAGCATTGCCAAGAGTTTCTAGACTAAGATTCTTTAACACAGTGTCAACACGTGCACCTGTTCATGTATGAATCTTCCTCCTAGGTCATACTTGTTTCTTGAGACTTTTTAGTTTTGTGGTTTAAGTGTAACCTAGCAGTTATCCTTTAACCAGACACCCCTAGGCCATGGTTATCAGTTCACTGCTTACTTTGTGTGAAATAGttcaatcattaaaaaaagtctcTGTGGCAAGGTTatactagcaaaaaaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940835.2 True 2783 mRNA 0.42 1 6263628 6266410

Neighbor

gene id symbol gene type direction distance location
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding upstream 39214 6217438 ~ 6224414 (+)
LOC113543022 fam124b coding upstream 116538 6140585 ~ 6147090 (+)
cul3b cul3,LOC100710156,LOC104924156 coding upstream 125227 6124611 ~ 6138401 (+)
LOC113543361 NA coding upstream 155259 6106002 ~ 6108369 (+)
dock10 dock10 coding upstream 167166 5995489 ~ 6096462 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding downstream 83 6266493 ~ 6267874 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding downstream 8329 6274739 ~ 6276110 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding downstream 117600 6384010 ~ 6399285 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding downstream 167856 6434266 ~ 6470111 (+)
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding downstream 629836 6896246 ~ 6904082 (+)
G315591 LOC108280904,LOC108424092,LOC107680073,LOC107551266,LOC107749066,LOC107703962,LOC107598569 non-coding upstream 10959 6251434 ~ 6252669 (+)
G315583 LOC108280691,LOC108424091 non-coding upstream 29365 6232601 ~ 6234263 (+)
G315584 LOC108280690 non-coding upstream 32049 6230576 ~ 6231579 (+)
G315580 NA non-coding upstream 36958 6225971 ~ 6226670 (+)
G315579 LOC108280872 non-coding upstream 37861 6224759 ~ 6225767 (+)
G315647 NA non-coding downstream 133330 6399740 ~ 6399979 (+)
G315648 NA non-coding downstream 136992 6403402 ~ 6403601 (+)
G315650 NA non-coding downstream 139712 6406122 ~ 6407755 (+)
G315665 NA non-coding downstream 209279 6475689 ~ 6475893 (+)
G315660 NA non-coding downstream 239530 6505940 ~ 6506686 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 36388 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 362062 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 892731 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1044010 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 1047037 5201021 ~ 5216591 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 670930 6937340 ~ 6944990 (+)
G316001 NA other downstream 867049 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1315903 7582313 ~ 7598164 (+)
G316413 NA other downstream 1429124 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 1485284 7751694 ~ 7756961 (+)

Expression


Co-expression Network