LOC113543022 (fam124b)


Basic Information

Item Value
gene id LOC113543022
gene name fam124b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6140585 ~ 6147090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940946.2
TGTCATTCCCAGACACTTCCCATAGCGCTTCCTACTACATCCTGGACCTGTGGGGTGTTTTGTAAAGCTGTTAGTCTGGCTTaggaatttttatatataatttttaattacagtaataaaattGGGATTAATGACGCTCGCGGTAGGTGGCGCTAAAATGCGCAGAACCGACGCCTAGCGGACAGCAGGCAGGACAACACCGCTACTTTTATTCCGCAATGGAAAGTTTGAAAGTGTCTCACTCGATGGGAAATTTAGCTGAAAAAGAAATGGTGAAATAATGCTGCGTAGACCTTTTATACTCCACAAAAGCGTGGAGGATGGGAACACGGACTCTGGAGCCGAAACTGCAGGatcAGACTGCAGCAAAATGTCTTGCAGTAGCATTGACCTCATGACTCGCGATCCCCTACCAGTCGCCATGCACCTGCTGTCCAACCCGGGTGactctctcctcctccagcaCACACTGGACCGCCTGCTTGATTGGGTGTGTCCTGGTTTGCGCCTCTTCCATGTGTCTGAACGCGCCTGCCCGGTACGCGAGTACACCCGTGCTCACTTGTGCCCGCCAAGCAGCTACCCTTCTCTAGCCGTCACCTTTTTTCTGCATGAGTCCTACGGTGAAGAACGCATCCTCCGGGTCCTTGACTTCCTCCAGCGCCCACCCTGGCAGTACCACCACACTGAGAATGGCCATGCGAGCTCTGATGCCATGCTCCGACCATACCTGCTGCCTGGACGGGACTTCTACAGTCTTGGCCCAGGTATGCCAGTGTGGGCCGTGCGTCCGGTGCATTGCGGAGGTGAAGTGCTGCGAGTGACTCTGCACAGCGGGCACGAGAACTTTGAGGACTCTGTGAGACTTTACGAGACAGTGCTGCGCGTGAGAGCTGAGGAGCAGAAATCTGGGTTTTGCTGGTTTACCTTGCTGAAAGAAAGGACTTTCAGTCTGCAGCTAGCGCTCAAGCAGCTGGCGCCTGGTGTGCGGGTGGAGACGTGCCACTCTGCTGTGCTGCAGTTCAGGGTGGGCGAGATCGGCCAGCTCGTGCCCCTGCTGCCCAACCCGTGCTCACCTATCAGCGCCACCCGCTGGCAGACGGAGGACCTGGATGGTAGCAAGATCCTCTTTCAGGTTAAAGGAGGAACACAGCCACAGAGGCTCTTCACATCGGCTTTTCCCCTAAGCTGCCCTGCTCTTCCTTCTAGATCGCTGTTGAGGTGCCCAGTCCCCATCTCAGCCTCGCCGGGCACCAGGCTGTGCCAGCTTAAAGAGCGTGCTCTGGGTAGCACTGCTGGATCCCACAGATTGGCAGGAGGTGCCACAGAGAGCTTTGGTTCCAGCAGTGCTTGTAGTACTCCTCCTGGCAGCTCCTGCTACTCATCCCAGTGCAGCAGCCCTGCCCTTCTATCCATCAATCCCTTCGAGCCAGTCACACCGTCTGGTGCATCTGCGGCTCACCTTATGCTggagaaggaagaagagaaggagcCAGAGACAAACGTAGACACAGGCTGTGCTGTCAATATACAGAGACCTGCTCTGGACACACTAGCAAGAGACTTGAGATGCTGCCTGCCAGAGGTACAGAGGACGTGGGCTGGATCAGAAGGAGAGAGTCAGTCAGACCCCATGGCAGCACAGAGCCTCGTTCAAGAGCATGAACAAGTGGACGAGTTCTTCATCTGATTGACTTCTACAAACAGTAAATTAATTAGAGCTGTACCAATCTGACACTGAGTATCCGTATCACGGCGAGCCTGGCTTGAAATGCTGGATCAGCATTAAACCAGATCCACTTTATGCTGTGAACACGTTACATTGACTGACATGTCACAgatcatgcacatgaacttgTCACCGTCACCTCCGATGTTTTGCATAACTCAATTTTGCATAGCAGAACCTCACAGAGTCAAGGCGAGTACTGGATCAAAATTATTTAACCGCCTATAACCGAGGCTGTGggatattatataaaaaaaaaagggataaaATGGGATCGCAGCATCCTTAAACACGATATAATCATGTTTCAGTTTTTGTCAGCAATTCCAAGGCTGCCTATGGAGTCAGGATCTTTAggcatatagtgtgtgtgttcaccagACAAGAGCTCCAATCTCTCCTGACTGAGGaatctatttaaaatacagtattataattatatttttaaatggtcaTAAAAGATTTGGCAATTGTCTCGATTTAATATCCGTGCTTCTATTATGAATTACAGTGTTGACCAGACAGtatcatattttctttatatatttgaaGCAAAGTAAGGGTGCAGATCAAGGATCTGTATTACACCAGCAACTGCAAAATATGAGCAAGAATGAACATAATGACCTATTAAAAATTAAGGCTAGAGAGTCTGAAGGTTTGGTGATTTCCCTGCTTAAAGACACAACTTCATTTCTTCACAAGTTCATTTCTAGCATGAGTGTTTGAGCAGGGAAATCAAATTCCAAATGCagaacactttttaaaaactcaAAACTGATCTCTAAAACACCTACATGCTGTAGACAAACTTATGGCGTAAGTATAACCACTAAAAGATCACTATATCGGATATTATTTTGATCATACACAATCAGTCTtgtcattacagtgtgtttagGAACACTCTGTGAAGTAAATTAAGTTCACAGGAAGGAAT

Function

symbol description
fam124b Located in mitochondrion and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940946.2 True 2669 mRNA 0.48 4 6140585 6147090

Neighbor

gene id symbol gene type direction distance location
cul3b cul3,LOC100710156,LOC104924156 coding upstream 2184 6124611 ~ 6138401 (+)
LOC113543361 NA coding upstream 32216 6106002 ~ 6108369 (+)
dock10 dock10 coding upstream 44123 5995489 ~ 6096462 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding upstream 357351 5782293 ~ 5783234 (+)
lxn LOC108280775 coding upstream 416786 5716306 ~ 5723799 (+)
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding downstream 70348 6217438 ~ 6224414 (+)
LOC113542971 LOC108280887,LOC103033590,LOC108424028 coding downstream 116538 6263628 ~ 6266410 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding downstream 119403 6266493 ~ 6267874 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding downstream 127649 6274739 ~ 6276110 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding downstream 236920 6384010 ~ 6399285 (+)
LOC117599998 NA non-coding upstream 398231 5741742 ~ 5742354 (+)
G314969 NA non-coding upstream 528822 5611559 ~ 5611763 (+)
G314954 NA non-coding upstream 552666 5587702 ~ 5587919 (+)
G314923 NA non-coding upstream 592393 5547889 ~ 5548192 (+)
G314915 NA non-coding upstream 606600 5533766 ~ 5533985 (+)
G315454 NA non-coding downstream 30364 6177454 ~ 6178053 (+)
G315579 LOC108280872 non-coding downstream 77669 6224759 ~ 6225767 (+)
G315580 NA non-coding downstream 78881 6225971 ~ 6226670 (+)
G315584 LOC108280690 non-coding downstream 83486 6230576 ~ 6231579 (+)
G315583 LOC108280691,LOC108424091 non-coding downstream 85511 6232601 ~ 6234263 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 239019 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 769688 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 920967 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 923994 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 1049312 5087839 ~ 5091273 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 79627 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 790250 6937340 ~ 6944990 (+)
G316001 NA other downstream 986369 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1435223 7582313 ~ 7598164 (+)
G316413 NA other downstream 1548444 7695534 ~ 7695919 (+)

Expression


Co-expression Network