G315579 (LOC108280872)


Basic Information

Item Value
gene id G315579
gene name LOC108280872
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6224759 ~ 6225767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373735
CGAGAGTTCAAGCTCCGTCTTTTCAAATAGGTCTTGTGGTTTGCCTGTATGGACTTGGAAAGAATGCAGCATGATGCCTTGCAAAGAGTGGATCCTCTGCTTCTGGCATTGCTGCTTCTTGTGTCGTTCTTATTTGTTCCTCTGGCTCTGGAGGTGCTTTAAACCACGAAGTACTCAGCACTCCTCCTCCAATCAGAAGCAACACCATTCCAACCCACCCGGAATATAAAGCTGTCCCCCAGTCCCTTTTCAAAGGAATGGATGTGTCCAAATCACTGTTTGTGGCATGAGTGATCCAGCTTACAATCACCAGCATCAGCAGCccagataaaacaaaaacaaatccagcTGCTGCCTTGATTCGCACCTTCTGAGGGAACATGGTCACGGCCACTATGTAGAGCACTATGGGAATGACTCCCACTCCAATCAAAACATTAACAGACACTTTCCAGGAGTTAAAGTGTCCAGCCAGGGACAAAAGCGACTGATAGAAGTGGCAGTGCAAGTCTCCTATCCTTGGTTCTTGCCAGTTCAACCAGATTCCATCCCAGTACAGAGACAAAGTATCTGTTGTATTGTCAACAGCTCCAGTCACGATCCACACAGGCAGGGTCCTGGTGAAGATGGCAAAAATCCAGCCAGAGAAGGCGACCCCGAAACTGGCCTGCTCGAACACCCTGTGCCACCTCTCCATGATTATTTTCAATGAGGAACAAAAAGAAACTGCGAGCTCACTTCTGGAGCAAACTGGGCTATCTGCATTCCAGCTGTGGGTGTGGAAACCACAGAGTATTCACTGCTGTTTTTCACCAAtggattcaaaatattttcagtggctcttctcttttttttcgcCTGGAGGCTAAAACAATGATGTCACTGTGTGAAATCAGCAACCTCCTCGCTCTTGACCTCTTTTGTGAGCAGAGACACAACAATGCATTCAATGCCCAAAGACACCACGAAGTATGAAAACTGGAAgcaaattttattcaaatagGAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373735 True 1009 lncRNA 0.46 1 6224759 6225767

Neighbor

gene id symbol gene type direction distance location
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding upstream 345 6217438 ~ 6224414 (+)
LOC113543022 fam124b coding upstream 77669 6140585 ~ 6147090 (+)
cul3b cul3,LOC100710156,LOC104924156 coding upstream 86358 6124611 ~ 6138401 (+)
LOC113543361 NA coding upstream 116390 6106002 ~ 6108369 (+)
dock10 dock10 coding upstream 128297 5995489 ~ 6096462 (+)
LOC113542971 LOC108280887,LOC103033590,LOC108424028 coding downstream 37861 6263628 ~ 6266410 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding downstream 40726 6266493 ~ 6267874 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding downstream 48972 6274739 ~ 6276110 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding downstream 158243 6384010 ~ 6399285 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding downstream 208499 6434266 ~ 6470111 (+)
G315454 NA non-coding upstream 46706 6177454 ~ 6178053 (+)
LOC117599998 NA non-coding upstream 482405 5741742 ~ 5742354 (+)
G314969 NA non-coding upstream 612996 5611559 ~ 5611763 (+)
G314954 NA non-coding upstream 636840 5587702 ~ 5587919 (+)
G314923 NA non-coding upstream 676567 5547889 ~ 5548192 (+)
G315580 NA non-coding downstream 204 6225971 ~ 6226670 (+)
G315584 LOC108280690 non-coding downstream 4809 6230576 ~ 6231579 (+)
G315583 LOC108280691,LOC108424091 non-coding downstream 6834 6232601 ~ 6234263 (+)
G315591 LOC108280904,LOC108424092,LOC107680073,LOC107551266,LOC107749066,LOC107703962,LOC107598569 non-coding downstream 25667 6251434 ~ 6252669 (+)
G315647 NA non-coding downstream 173973 6399740 ~ 6399979 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 323193 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 853862 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1005141 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 1008168 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 1133486 5087839 ~ 5091273 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 950 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 711573 6937340 ~ 6944990 (+)
G316001 NA other downstream 907692 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1356546 7582313 ~ 7598164 (+)
G316413 NA other downstream 1469767 7695534 ~ 7695919 (+)

Expression


Co-expression Network