G316001


Basic Information

Item Value
gene id G316001
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7133459 ~ 7135501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374286
GTTTGAACACACGCTGAAaaacactttaatataaaaatgagtTGTGGGAAAAAGCCCCCTGCCTCCTCAGTcttcctcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaggtgcTACAGCAgtgcaaaaggaaaaaaaagtgtcacttCTGGTGTAAAATGGTCTTAATCCGCAAATTTGTGTAGCTTGTTGTTGTGTATTGCACCATGTCCCTTGAGGCACAATGCTAGGAATTTGAAGTTTGtcattattattgatattattattcattaatagcataaaataataaagaaaacaaaaacttcCATGACCAAATGTGTCCGAGTGGTAGAGTAAAACGACGAATGACGAAGAACTTGTTAACTGGAAAGGAAACGAGGCAGATATAAATAAACCGACACTAACTTTAGCTTGCCCAGACGGCGAGGCAGTGCTTTCTGTGCCTCCTGCTTGGCTTTACGCTTGGTCTGTCTCGTCTTGGTCCTCAGCTCCCTCTGCTTCAGATCTGCACCGATGGAACGCAGCTGGAAGAGCTGCTGTCGGCTGTTGAGCATCTTCCTCTCCGCCTTCTTCCGCAGCTCCTTTATCCTCTCGGctttctccctcttcctctgttTCTCCGTTTTTTTCTCCGGCTGCGCTGTCGGCCCGGCGCCTGCGTCTTTGGAATCCTCCGCTGTGTGCTCCGTTTCTTTCATTTCCTCCCCCTCGTCTTCCTCGATCAGACCTTCGACCTGTTCGTTAAAGACGCTCTCCTCAGTGGCGATGTCCATCCTGTTTACTGCCAGCTGTCTTTCCAGCTTCTCTTCAGCCTTCACCTTTTTCACCTCGGCCTCATGAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374286 True 885 TUCP 0.47 3 7133459 7135501

Neighbor

gene id symbol gene type direction distance location
meis3 meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131 coding upstream 124721 6997484 ~ 7008738 (+)
LOC113543373 prss16 coding upstream 150813 6971552 ~ 6982646 (+)
ech1 ech1,LOC107598793,LOC107677099 coding upstream 163511 6961943 ~ 6969948 (+)
hnrnpl2 hnrnpl,LOC107730992 coding upstream 174570 6945526 ~ 6958889 (+)
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding upstream 229377 6896246 ~ 6904082 (+)
atm atm,LOC106522150 coding downstream 9900 7145401 ~ 7203200 (+)
dscamb dscamb,dscam,LOC108280204,LOC108413375,LOC107562808,LOC107726116,LOC107561601,LOC106612992 coding downstream 123771 7259272 ~ 7394464 (+)
LOC113543091 NA coding downstream 306603 7442104 ~ 7453708 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding downstream 331132 7466633 ~ 7490001 (+)
LOC117595729 NA coding downstream 353869 7489370 ~ 7493819 (+)
G316000 NA non-coding upstream 3582 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 99653 7033565 ~ 7033806 (+)
G315901 NA non-coding upstream 198282 6934949 ~ 6935177 (+)
G315894 NA non-coding upstream 217918 6914261 ~ 6915541 (+)
G315886 NA non-coding upstream 238842 6894337 ~ 6894617 (+)
G316288 NA non-coding downstream 290960 7426461 ~ 7433424 (+)
G316317 NA non-coding downstream 369578 7505079 ~ 7505404 (+)
G316339 NA non-coding downstream 429585 7565086 ~ 7568068 (+)
LOC117599993 NA non-coding downstream 513203 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 534830 7670331 ~ 7670559 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 188469 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 906219 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1231893 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 1762562 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1913841 5219545 ~ 5219618 (+)
crsp7 LOC108280732 other downstream 446812 7582313 ~ 7598164 (+)
G316413 NA other downstream 560033 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 616193 7751694 ~ 7756961 (+)
G316744 NA other downstream 1127838 8263339 ~ 8264061 (+)
G316745 NA other downstream 1133208 8268709 ~ 8269198 (+)

Expression


Co-expression Network