G314675


Basic Information

Item Value
gene id G314675
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4978021 ~ 4978966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372728
cacacacacacatgttgatAAAGAGTATGGTGGATTCCATGAAAGTTCGATGCTAAGTGCAATTACAGTGTAACTGTAGTCATATGGAGgcttttcttcatattttgttAACACATCTAAGGGAAATGTTCCTATCAGCTCTGTCTCATTTCCAGACTATCCATATAAAAGCTTTAACAGCTACCTCTTAGCTAGACAGTGTTCTCACAGCTTTAACCCCTTGAACATGTCATGTGTTtgcaattttcatttaaatgcacCAAAAACCAATACTGTGCAATCCTACATTAGTACTACTACATTAGTATGACTCCTAAAGTCCTGCTGTGCTGACTGTTGATTGCTGAATCCTGGATATTTTTTGTGGATGATTGTGGAAAGATTAGGGGCAGAACTTGCCATACAGAACACTGCTGACCCACTTATTCACCAGTTTTTATAAACCTGCATTTAGCTAATGAGCAattcataaatgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372728 True 510 lncRNA 0.39 3 4978021 4978966

Neighbor

gene id symbol gene type direction distance location
bud23 wbscr22 coding upstream 387065 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 401373 4546135 ~ 4576648 (+)
cux1b cux1,LOC106581515,LOC105006988 coding upstream 444047 4376994 ~ 4533974 (+)
LOC113543315 LOC108280769,LOC108423999 coding upstream 627477 4315743 ~ 4350544 (+)
wdr53 wdr53 coding upstream 669969 4300799 ~ 4308052 (+)
LOC113543019 zadh2 coding downstream 53283 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 81064 5060030 ~ 5070433 (+)
LOC113543113 NA coding downstream 91652 5070618 ~ 5073139 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding downstream 142731 5121697 ~ 5191399 (+)
LOC113543161 arl14 coding downstream 217683 5196649 ~ 5197934 (+)
LOC117599956 NA non-coding upstream 84743 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 131304 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 176918 4800652 ~ 4801103 (+)
G314609 NA non-coding upstream 197876 4779938 ~ 4780145 (+)
G314404 NA non-coding upstream 450201 4517601 ~ 4527820 (+)
G314785 NA non-coding downstream 143732 5122698 ~ 5123402 (+)
G314800 NA non-coding downstream 241680 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 344358 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 395464 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 395777 5374743 ~ 5374957 (+)
LOC113543089 mbp other upstream 19900 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 188186 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 215926 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1488654 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 2088633 2889315 ~ 2889388 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 108873 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 222055 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 240579 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 362043 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 915538 5894504 ~ 5901566 (+)

Expression


Co-expression Network